Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51030 472 / 4e-169 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 416 / 6e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 231 / 1e-74 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G24190 189 / 2e-58 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G61220 187 / 2e-57 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 177 / 2e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G37540 71 / 1e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50700 68 / 1e-12 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 68 / 1e-12 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT4G09750 66 / 5e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043023 [exp] 608 / 0 AT5G51030 495 / 3e-178 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032525 [exp] 436 / 6e-155 AT5G61830 450 / 1e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034835 [exp] 236 / 1e-76 AT3G59710 335 / 2e-115 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035736 [exp] 227 / 7e-73 AT3G59710 355 / 2e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008413 [exp] 207 / 4e-65 AT2G24190 273 / 3e-91 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10019546 [exp] 194 / 4e-60 AT2G24190 253 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 193 / 1e-59 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 189 / 6e-58 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 185 / 1e-56 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108400 [exp] 489 / 4e-176 AT5G51030 468 / 2e-167 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G110200 [exp] 478 / 1e-171 AT5G51030 460 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G127700 [exp] 256 / 3e-84 AT3G59710 326 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G157000 [exp] 202 / 2e-63 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G158200 [exp] 195 / 5e-60 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 192 / 1e-59 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 191 / 4e-59 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 191 / 6e-59 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 191 / 8e-59 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 190 / 2e-58 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10032524 pacid=23146389 polypeptide=Lus10032524 locus=Lus10032524.g ID=Lus10032524.BGIv1.0 annot-version=v1.0 ATGAGAAGTAAAGAGCAATCCAAAGAACGCAAAGAGAAGAGGCGTCAAGAGATTTCTCTCCTCCGAACCATTCCTTATTCCGATCACCAAAGATGGTGGT CTGTGGAGACAGTTGCCATGGTGACAGGCGCCAACAGAGGGATAGGGTTTGAGATAGTGAGACAACTTGCGGGACAAGGCATCACAGTAATACTAACTTC GAGAGAAGAGAGCGCTGGAGTGGAAGCGGCTAGCGTGCTGCAAGAATTAGGCCTCAGTGTGGCGTTTCACCAGCTCGATGTTCTGGACAATTCGTCGATT CAGGAATTCTGCGAGTGGCTAACAATTCATTATGGTGGCATAGACATTCTGGTTAACAATGCAGGGGTTAACTTCAACATGGGGTCCGAGAATTCGGTGG AATCCGCTCGGATGGTCATAGATACTAATTATTATGCACTGAAGAATGTAACCAAGACTATGATCCCTCTGATTAGATCATCTCAAGCTGGTGGCCGTGT TGTTAACGTCAGCTCACGGCTCGGCAGGGTCAACGGGAAACGGAATAGGATCGAGAACGAGGACATAAGGGAACAACTAAACGACATGGAGAAACTGTCG GAGGAACTGATAGACAGGACCATGTCCAAATTCCTAGAGCAGGTAGAAGACGGGAGCTGGGAATCAGGAGGGTGGCCTCACGCAAACACCGATTACTCCG TTTCGAAACTCGGGGTGAATTGCTTCACCAGGCTTCTAGCTAAGCAGCTCAGCGATCGACCAGAAGGCGAGAAGATCTACGTGAACTGCTACTGCCCTGG GTGGGTGAAAACTGCAATGACTGGGTGGGCTGGTACCATATCGGCAGAGGACGGTGCCGATACCGGAGTTTGGCTCGCCCTCCTTCCTGATCAGGCTATC ACCGGTAAGTTCTTCGCCGAGAGACGTGAGATCGGCTTCTGA
AA sequence Show only first row Show all	>Lus10032524 pacid=23146389 polypeptide=Lus10032524 locus=Lus10032524.g ID=Lus10032524.BGIv1.0 annot-version=v1.0 MRSKEQSKERKEKRRQEISLLRTIPYSDHQRWWSVETVAMVTGANRGIGFEIVRQLAGQGITVILTSREESAGVEAASVLQELGLSVAFHQLDVLDNSSI QEFCEWLTIHYGGIDILVNNAGVNFNMGSENSVESARMVIDTNYYALKNVTKTMIPLIRSSQAGGRVVNVSSRLGRVNGKRNRIENEDIREQLNDMEKLS EELIDRTMSKFLEQVEDGSWESGGWPHANTDYSVSKLGVNCFTRLLAKQLSDRPEGEKIYVNCYCPGWVKTAMTGWAGTISAEDGADTGVWLALLPDQAI TGKFFAERREIGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10032524 [exp]	0	1
AT4G34540			NmrA-like negative transcripti...		Lus10012146 [exp]	1.7	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10001981 [exp]	2.6	1.0000
AT2G25940		ALPHAVPE, ALPHA...	alpha-vacuolar processing enzy...		Lus10033344 [exp]	2.6	1.0000
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10005194 [exp]	4.0	1.0000
					Lus10032314 [exp]	4.4	0.9354
					Lus10027667 [exp]	5.3	1.0000
					Lus10015682 [exp]	5.9	1.0000
AT4G18340			Glycosyl hydrolase superfamily...		Lus10031034 [exp]	6.5	1.0000
AT2G14378			Protein of unknown function (D...		Lus10019101 [exp]	8.0	1.0000
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020431 [exp]	8.5	1.0000

Compare expression of checked genes

Lus10032524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.