Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61830 431 / 5e-153 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G51030 416 / 5e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 226 / 1e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G24190 176 / 4e-53 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G61220 175 / 9e-53 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 169 / 2e-50 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G63380 69 / 4e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G62610 67 / 1e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT4G23430 67 / 3e-12 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G09750 66 / 4e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032524 [exp] 437 / 2e-155 AT5G51030 493 / 2e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10043023 [exp] 437 / 4e-155 AT5G51030 495 / 3e-178 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034835 [exp] 221 / 2e-70 AT3G59710 335 / 2e-115 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035736 [exp] 212 / 6e-67 AT3G59710 355 / 2e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040933 [exp] 176 / 3e-53 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10008413 [exp] 171 / 7e-51 AT2G24190 273 / 3e-91 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014694 [exp] 170 / 1e-50 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10037320 [exp] 166 / 9e-50 AT3G59710 277 / 2e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014693 [exp] 166 / 3e-49 AT3G61220 347 / 3e-120 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G110200 [exp] 442 / 3e-157 AT5G51030 460 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G108400 [exp] 432 / 2e-153 AT5G51030 468 / 2e-167 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G127700 [exp] 244 / 1e-79 AT3G59710 326 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G157000 [exp] 184 / 2e-56 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 176 / 5e-53 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 164 / 2e-48 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 164 / 2e-48 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 164 / 3e-48 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 163 / 6e-48 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 162 / 8e-48 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10032525 pacid=23146393 polypeptide=Lus10032525 locus=Lus10032525.g ID=Lus10032525.BGIv1.0 annot-version=v1.0 ATGGGAAAGGGAACCAAAGAGCGTGCGAAAGAGCGACGAGAAAAGATACGCCAAGAGATTTCCCTTCTCCGTACCATTCCCTACCCCGATCACCAAAGGT GGTGGAACTCTGATACTGTGGCCGTAGTTACTGGTTCAAACAGAGGAATAGGGTTTGAGATTGCGAAACAGCTTTCCGGCCATGGAATTACTGTTATACT GACATCCAGAAACCCTAATTCTGGAATTGAAGCTGCTAAGTTTTTGCAAGAATTAGGCCTATCTGTAGTGTTTCACGAGCTTGATGTCCTGCACACTTCG TCTATCGATCGTTTTGCTGAGTGGATAAAACACGAGTATGGTGGTATCGACATTCTGGTGAATAATGCAGGGGTTAACTTCAATCTTGGTTCTGATAACT CTGTCGAATTCGCCCAGCTGGTCATTGATACCAATTATCAGGGAACTAAGAACATGACCAAAGCCATGATCCCATTGATGAGACATTCTCCAGCTGGTTC GCGAATCGTTAATGTGTCCTCCAGGCTGGGTAGAGTGAACGGGAGACGAAACAGGATTGGAGATGTAACGCTAAGAGAACAGCTAAGTGGTGCCGAGACA CTTTCGGAGGAGTTAATTGACACGATGTTATCGAGTTTCCTCCAGGAAGTTGAAGACGGGACTTGGGAATCAAGCGGGAGGTGGCCTCAGGTGTTCACGG ACTATGCACTGTCGAAGCTCGGAGTTAATTGTTTCACCAGGTTGATGGCTAAGTTGCTCTCTGACAGGCCCGATGGCGAGAAGATTTCCGTGAACAGTTT CTGCCCCGGCTGGGTGAAAACTGCCATGACGGGTTGGAATGGTAACATATCGCCGGAGGAAGCTGCAGATACCGGTGTGTGGCTGTCGTTTCTGTCGGAG GTTTCGACGGGGAAGTTCTATGCAGAGAGGCGTGAGATAAGCTTTTGA
AA sequence Show only first row Show all	>Lus10032525 pacid=23146393 polypeptide=Lus10032525 locus=Lus10032525.g ID=Lus10032525.BGIv1.0 annot-version=v1.0 MGKGTKERAKERREKIRQEISLLRTIPYPDHQRWWNSDTVAVVTGSNRGIGFEIAKQLSGHGITVILTSRNPNSGIEAAKFLQELGLSVVFHELDVLHTS SIDRFAEWIKHEYGGIDILVNNAGVNFNLGSDNSVEFAQLVIDTNYQGTKNMTKAMIPLMRHSPAGSRIVNVSSRLGRVNGRRNRIGDVTLREQLSGAET LSEELIDTMLSSFLQEVEDGTWESSGRWPQVFTDYALSKLGVNCFTRLMAKLLSDRPDGEKISVNSFCPGWVKTAMTGWNGNISPEEAADTGVWLSFLSE VSTGKFYAERREISF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10032525 [exp]	0	1
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	1.7	0.9408
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10009067 [exp]	2.0	0.9295
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10013287 [exp]	5.8	0.9332
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027955 [exp]	6.0	0.9277
AT3G18620			DHHC-type zinc finger family p...		Lus10013426 [exp]	7.7	0.9322
AT1G43860			sequence-specific DNA binding ...		Lus10042780 [exp]	8.4	0.9136
AT5G10700			Peptidyl-tRNA hydrolase II (PT...		Lus10020143 [exp]	8.8	0.8884
AT5G58740			HSP20-like chaperones superfam...		Lus10018234 [exp]	9.0	0.9164
AT2G37480			unknown protein		Lus10023755 [exp]	10.8	0.9093
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10015686 [exp]	10.9	0.8989

Compare expression of checked genes

Lus10032525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.