Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50920 1236 / 0 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 1170 / 0 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G51070 692 / 0 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT5G15450 669 / 0 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT2G25140 655 / 0 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT1G74310 603 / 0 HOT1, ATHSP101 heat shock protein 101 (.1) AT4G14670 406 / 2e-133 CLPB2 casein lytic proteinase B2 (.1) AT3G45450 193 / 1e-55 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 71 / 2e-12 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 64 / 2e-10 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036017 [exp] 1261 / 0 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 1258 / 0 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043197 [exp] 780 / 0 AT5G50920 802 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032514 [exp] 703 / 0 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10043013 [exp] 701 / 0 AT5G51070 1288 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10041018 [exp] 639 / 0 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10030705 [exp] 613 / 0 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10021159 [exp] 592 / 0 AT1G74310 1421 / 0.0 heat shock protein 101 (.1) Lus10013191 [exp] 585 / 0 AT5G15450 1605 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105100 [exp] 1248 / 0 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G105900 [exp] 1245 / 0 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G112000 [exp] 687 / 0 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G110000 [exp] 681 / 0 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.006G262700 [exp] 668 / 0 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.004G124800 [exp] 653 / 0 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.017G090600 [exp] 632 / 0 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.015G057000 [exp] 610 / 0 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 608 / 0 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.005G197400 [exp] 595 / 0 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [flax] [poplar] AAA_lid PF02151 [flax] [poplar] UVR UvrB/uvrC motif CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA) CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10032544 pacid=23146404 polypeptide=Lus10032544 locus=Lus10032544.g ID=Lus10032544.BGIv1.0 annot-version=v1.0 ATGCCAACTCTTGAAGAATATGGAACTAATTTGACCAAACTTGCAGAGGAGGGGAAATTAGATCCCGTTGTTGGGAGGCAGCCGCAGATAGAGCGTGTTG TCCAAATCTTGGGTCGGAGGACTAAGAATAACCCTTGTCTAATTGGAGAGCCAGGCGTTGGTAAAACAGCAATTGCTGAGGGTCTTGCTCAACGAATAGC AAGTGGTGATGTTCCTGAAACAATTGAAGGAAAGAAGGTTATCACTTTGGATATGGGTCTTCTTGTTGCTGGAACAAAGTACCGTGGAGAGTTTGAGGAA AGGCTCAAGAAGCTGATGGAGGAAATCAAACAGAGTGATGAAATTATTCTTTTCATTGATGAGGTGCATACGTTAATTGGTGCTGGAGCTGCAGAAGGTG CCATTGATGCAGCTAATATCTTGAAACCAGCTCTTGCTAGGGGTGAATTGCAGTGCATAGGAGCTACGACATTAGATGAATACCGAAAACATATTGAGAA GGACCCAGCTTTGGAAAGACGGTTCCAGCCTGTCAAAGTACCAGAGCCATCTGTGGATGAAACCATTCAGATATTGAAAGGGCTTCGTGAGCGATATGAG ATTCACCACAAGCTTCGCTACACAGATGAATCCCTAGAAGCTGCCGCCAATCTATCATACCAGTATATCAGTGACCGTTTCTTGCCTGACAAGGCAATTG ACTTGATTGATGAAGCTGGCTCTCGCGTTCGTCTGCGCCATGCACAGGTCCCTGAGGAAGCTAAGGAGCTCGAGAAAGAGGTCAGGCAGATTATAAAGGA GAAGGACGAAGCTGTTCGCAATCAAGACTTTGAAAAGGCTGGAGAATTGCGTGATCGGGAAATGGACCTCAAGGCACAGATCTCAGCTATCGTGGAGAAG GGCAAGGAGATGAGTAAAGCCGAAACGGAGGCCGGGGAGGAAGGTCCAATGGTGACTGAAGCAGACATTCAGCACATTGTCTCTTCATGGACCGGAATTC CCGTCGAGAAGGTGTCTGCTGATGAATCCGACCGCCTGCTAAAGATGGAAGAGACCTTACACAAGAGGGTCATCGGTCAGGATGAAGCTGTCGAAGCCAT TAGCCGCGCTATTCGCAGAGCCCGTGTCGGACTCAAGAACCCCAACCGGCCGATCGCCAGCTTCATCTTTTCCGGTCCGACCGGTGTTGGAAAATCGGAA CTCGCAAAAGCACTCGCTGCCTACTACTACGGGTCGGAAGAAGCCATGACTAGACTCGACATGAGCGAGTTCATGGAAAGACACACGGTATCCAAGCTCA TCGGTTCGCCTCCTGGGTATGTTGGTTACACCGAAGGCGGTCAGTTGACTGAAGCAGTTAGACGTCGCCCTTACACTGTGGTACTCTTCGACGAGATCGA GAAAGCCCACCCCGATGTCTTCAACATGATGCTTCAAATCCTGGAAGACGGAAGGTTGACCGATAGTAAGGGCAGAACGGTCGATTTCAAAAATACGCTC TTGATCATGACTTCGAACGTTGGGAGCAATGTTATTGAGAAGGGAGGAAAGAGAATAGGGTTCGACCTCGACTACGACGAGAAGGACAGCAGTTACAACA GGATCAAGAGCCTGGTGACTGAAGAACTGAAGCAGTATTTCAGGCCGGAGTTCTTGAACAGATTGGACGAGATGATCGTGTTCAGACAGCTGACGAAACT GGAGGTGAAGGAAATTGCTGATATAATGTTGGCAGAGGTTTTCGACAGGTTGAAGAAGAAGGAGATTGAGCTTCAAGTGACGGAGAGGTTTAGGGAGAGA GTTGTGAATGAAGGGTACAATCCGAGTTACGGAGCGAGGCCTCTGAGGAGAGCGATCATGAGACTTCTGGAGGATAGCATGGCTGAGAAAATGCTTGGAG GGGAGATCAAAGAAGGTGACTCGGTCATCGTGGATATTGATTCTGATGGCAAGGTCATAGTTCTCAATAGCGGCAGTGGCGCCCCTGATTCCCTACCAGA TGCGCTGTCTGTTGCATAG
AA sequence Show only first row Show all	>Lus10032544 pacid=23146404 polypeptide=Lus10032544 locus=Lus10032544.g ID=Lus10032544.BGIv1.0 annot-version=v1.0 MPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKKVITLDMGLLVAGTKYRGEFEE RLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYE IHHKLRYTDESLEAAANLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEAKELEKEVRQIIKEKDEAVRNQDFEKAGELRDREMDLKAQISAIVEK GKEMSKAETEAGEEGPMVTEADIQHIVSSWTGIPVEKVSADESDRLLKMEETLHKRVIGQDEAVEAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSE LAKALAAYYYGSEEAMTRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTL LIMTSNVGSNVIEKGGKRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLAEVFDRLKKKEIELQVTERFRER VVNEGYNPSYGARPLRRAIMRLLEDSMAEKMLGGEIKEGDSVIVDIDSDGKVIVLNSGSGAPDSLPDALSVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10032544 [exp]	0	1
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10007945 [exp]	10.2	0.7840
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10013645 [exp]	10.7	0.7715
AT2G33580			Protein kinase superfamily pro...		Lus10041171 [exp]	12.1	0.8549
AT4G19390			Uncharacterised protein family...		Lus10037258 [exp]	13.4	0.7791
AT5G13720			Uncharacterised protein family...		Lus10019743 [exp]	17.8	0.8406
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10011488 [exp]	19.3	0.8260
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10009190 [exp]	20.0	0.7620
AT3G10130			SOUL heme-binding family prote...		Lus10022712 [exp]	20.4	0.8257
AT3G56010			unknown protein		Lus10040939 [exp]	34.0	0.7936
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Lus10010671 [exp]	34.3	0.8159

Compare expression of checked genes

Lus10032544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.