Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47620 345 / 8e-113 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3A (.1) AT2G33610 157 / 3e-42 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) AT1G21700 123 / 2e-29 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT4G34430 106 / 9e-24 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043188 [exp] 972 / 0 AT2G47620 382 / 4e-127 SWITCH/sucrose nonfermenting 3A (.1) Lus10016043 [exp] 159 / 1e-42 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10025165 [exp] 159 / 9e-42 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10040472 [exp] 139 / 1e-34 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10023583 [exp] 137 / 1e-33 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10029695 [exp] 116 / 5e-27 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10026334 [exp] 116 / 7e-27 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042734 [exp] 113 / 4e-26 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042329 [exp] 109 / 1e-24 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100400 [exp] 507 / 3e-175 AT2G47620 395 / 7e-132 SWITCH/sucrose nonfermenting 3A (.1) Potri.002G004800 [exp] 172 / 3e-47 AT2G33610 435 / 3e-149 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Potri.002G080600 [exp] 134 / 4e-33 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.009G114900 [exp] 133 / 2e-32 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.004G153300 [exp] 129 / 3e-31 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.005G180800 [exp] 117 / 2e-27 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04433 [flax] [poplar] SWIRM SWIRM domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10032555 pacid=23146240 polypeptide=Lus10032555 locus=Lus10032555.g ID=Lus10032555.BGIv1.0 annot-version=v1.0 ATGGAGACAACAACAACCCGGCAGGACCCGATTGTGGATTCGACCCGACCAGGCGAACCAGAGTTCGATCTCTACACCATTCCCAGCTCCTCCAGTTGGT TTCGATGGAACGACATCCACGAGACGGAGAGATCCTCCCTGAGAGAGTTCTACGACGGGAGCTCAATTATGAGGAGCCCCAAAATCTACAAGGAATACCG AGACTTCATGATCAACAGGTACCGCGAGGATCCCTCCAGGAGACTTACCTTCACGGAGGTCCGCAAGTCCCTGGTCGGCGACGTCAGCCTGCTGCGGAAG GTCTTTCAGTTCTTGAACGACTGGGGATTGATCAACTTCGGCGCCGAATCGGCTCCACATGAGTTGGATAAGGAGGAGAAAGATGGAGTTAGGGTTGAGG ATGGACCTCCGAATGGCGTCCGTGTCGTGGCTACCCCCAATTCGTTGAGACCGATCTCGGCCCCGCACACCGGAGTCCCTCGCCGCATTGACGGAGGCGG GAATCGATCCAATTTTTCGCCGTTGGCGTCTTACTCTGATGTATTTGGCGAATTGGGGAGGCTCAAGGGAACCTTTTGTCGATGCTGTGGAGGAAATTGT GAGTCTGGCCGATATGTGAACGATAAGGAGGATAATTATGTAATCTGTGTCAAATGCTTCAATGATGGCAAGTATGGGAACGAATCCGCTGATAATTTCA AGCTCCGTGAGTGTAGTGACAGTAGCACTGAGCAAGGTGATTTATGGACAGATGCAGAGACTTTACTTCTTTTAGAGGCTGTTTTGAAGCATGGAGATGA CTGGGACCTTGTCGCTCAAAGCGTGAAAACCAAGACTAAACTTGAGTGTATTTCCAAGCTCATCGAGCTTCCGTTTGGGGAGTTCATTTCCCCTTCCTCC AGTCTTGGAAGGGACAATGCTCGAGGAGTACGTGTGATTGCAGACAGTGGAAAAGAAGTTCCTTTATCCTTACAAGGGCAGCAAGATGTGACAAAAGAAG ATGAGTTACATCCCACGCGGCCTGAAGTTAATGACCAGAACGGACATGATGCCGATAGCAATCCTCCTTTGAAAAAACAGCGTGTTTCTTCTCCTTCAGA AGCTGGAATTTCTATTATGAAACAGGTGGCTCACATCTCAAGTATGGTCAGGGCTGACATCACAGCTGCTGCAGCTCAGGCGGCTTTTGTAGCACTCTGT GATGAAGCCTCTTGTCCTAGAGAAAGCTTTGATGATGAGGAGGATTTCGTTAGCAGACTCTGGCCTCACTCTGGTCAGTCTGAGTCAGAGAGAGCGCATC AGGATGAAGATATAGAGAAAGGAGTACCTGCACAATCAGAAGCTGTGAAGACAAACTCCTGTCAGAATGATGTACCGTTAACTTTAAGACTTAGAGCTAC AGTTGCAGCAGCTCTTGGGGCAGCTGCTGCTCATGGAAAATTGTTGGCCGAGGAGGAAGACCAGCAAATCGAAGCTTTAGTTGGAACCATAACTGAGACA CAGTTGAAAAAACTGCAGTGTAAGATGAAAGATTTGGATGAAATGGAGGCTATCATGGAAAAAGAACATGCTGAATTAGAAGAAGTGAAGCGATGTTTAG CTGAGCAGCGAATTGACATCTTGTGCAGGGGAGGGATCTGA
AA sequence Show only first row Show all	>Lus10032555 pacid=23146240 polypeptide=Lus10032555 locus=Lus10032555.g ID=Lus10032555.BGIv1.0 annot-version=v1.0 METTTTRQDPIVDSTRPGEPEFDLYTIPSSSSWFRWNDIHETERSSLREFYDGSSIMRSPKIYKEYRDFMINRYREDPSRRLTFTEVRKSLVGDVSLLRK VFQFLNDWGLINFGAESAPHELDKEEKDGVRVEDGPPNGVRVVATPNSLRPISAPHTGVPRRIDGGGNRSNFSPLASYSDVFGELGRLKGTFCRCCGGNC ESGRYVNDKEDNYVICVKCFNDGKYGNESADNFKLRECSDSSTEQGDLWTDAETLLLLEAVLKHGDDWDLVAQSVKTKTKLECISKLIELPFGEFISPSS SLGRDNARGVRVIADSGKEVPLSLQGQQDVTKEDELHPTRPEVNDQNGHDADSNPPLKKQRVSSPSEAGISIMKQVAHISSMVRADITAAAAQAAFVALC DEASCPRESFDDEEDFVSRLWPHSGQSESERAHQDEDIEKGVPAQSEAVKTNSCQNDVPLTLRLRATVAAALGAAAAHGKLLAEEEDQQIEALVGTITET QLKKLQCKMKDLDEMEAIMEKEHAELEEVKRCLAEQRIDILCRGGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10032555 [exp]	0	1
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10020362 [exp]	3.2	0.8289
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	4.9	0.8332
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	4.9	0.8521
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10024999 [exp]	5.7	0.8453
AT4G32910			unknown protein		Lus10011625 [exp]	7.2	0.8319
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	14.2	0.8199
AT5G64730			Transducin/WD40 repeat-like su...		Lus10003855 [exp]	14.8	0.8051
AT3G24150			unknown protein		Lus10019404 [exp]	15.0	0.7968
AT1G09280			unknown protein		Lus10008045 [exp]	15.9	0.8013
AT3G52030			F-box family protein with WD40...		Lus10005328 [exp]	16.3	0.7886

Compare expression of checked genes

Lus10032555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.