Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50700 411 / 4e-144 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 411 / 4e-144 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50770 313 / 7e-106 ATHSD6 hydroxysteroid dehydrogenase 6 (.1) AT3G47350 295 / 8e-99 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT4G10020 281 / 2e-92 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT5G50690 276 / 8e-92 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 276 / 8e-92 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT3G47360 271 / 1e-89 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT5G65205 98 / 2e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10050 97 / 8e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043187 [exp] 687 / 0 AT5G50600 404 / 4e-141 hydroxysteroid dehydrogenase 1 (.1) Lus10001511 [exp] 566 / 0 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10031448 [exp] 561 / 0 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10016748 [exp] 370 / 4e-126 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1) Lus10022441 [exp] 353 / 1e-121 AT5G50770 349 / 3e-120 hydroxysteroid dehydrogenase 6 (.1) Lus10022442 [exp] 271 / 8e-90 AT3G47350 282 / 1e-94 hydroxysteroid dehydrogenase 2 (.1.2) Lus10041045 [exp] 253 / 3e-81 AT4G10020 506 / 3e-180 hydroxysteroid dehydrogenase 5 (.1) Lus10001280 [exp] 249 / 6e-80 AT4G10020 495 / 5e-176 hydroxysteroid dehydrogenase 5 (.1) Lus10009467 [exp] 246 / 5e-79 AT4G10020 501 / 1e-178 hydroxysteroid dehydrogenase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100000 [exp] 325 / 9e-111 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.012G101900 [exp] 319 / 1e-108 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 313 / 4e-106 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.012G102000 [exp] 306 / 2e-103 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.016G048900 [exp] 305 / 2e-102 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048800 [exp] 295 / 6e-99 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.019G073200 [exp] 269 / 4e-88 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.013G100200 [exp] 263 / 5e-86 AT4G10020 506 / 0.0 hydroxysteroid dehydrogenase 5 (.1) Potri.007G086600 [exp] 90 / 3e-20 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G125900 [exp] 89 / 5e-20 AT3G12800 421 / 9e-150 short-chain dehydrogenase-reductase B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10032556 pacid=23146363 polypeptide=Lus10032556 locus=Lus10032556.g ID=Lus10032556.BGIv1.0 annot-version=v1.0 ATGGATCTGGTTCACACGTTCCTCAACTTGGTAGCTCCACCATTCACATTCTTCTCCCTCTGCTTCCTCCTTCCGCCTTATTTCCTCTTCAAGACCTTCA CCTCAGCGGTATCCTATGTTTTCAGCGAGAATGTCTCCGGCAAGGTCGTCCTCATCACCGGCGCCTCCTCTGGCATCGGCGAGCATCTGGCTTATGAGTA TGGGAGCAGAGGCGCATGTTTGGCACTGGTGGCACGCAGAGAAAAAGGGCTTAGAGAAGTAGTTGACCTTGCCCTTGAACTCGGATCTCCTCAAGTCGTT ATGATCGTCGGAGATGTCCAAAAGGTCGACGACTGCCGCAGAATTGTCAACGAAACCATTAACCATTTCGGCAGACTGGATCACTTGGTGAACAATGCTG GGATCAGTTCAGTCTGCTTCTTTGAAGATGCAACCGATGTCACCAACTTCCGTACCATAATGGACACGAACTTCTGGGGTTCGGCTTACATAACCCAATT CGCAATTCCGTACCTGCGACAAACGGCTGGCAAGATCATTGCTCTCTCTTCAGCAGGTTCTTGGCTTCCTGAGCCAAGGATGACCATCTACAATGCAAGC AAAGCAGCTATGGTGGCATTCTTCGAGACGCTGAGGGTGGAGCTAAGCCCAGACATAGGTGTCCTAATCGTCACTCCTGGTTACATTGAGTCGGAGCTCA CACAAGGAAAATTCATGACTGCTGAAGGCAGGATGGATGTAGATCAAGATTTGAGAGATGAAAAATTCGGTCCGATACCGGTGGCGTCCGTGGTAAGCAC GGCGAAGGCCATCGTGAATAGTGCGTGCAGAGGGGACAAGTACCTGACCGTTCCGGCATGGGTGAGGACGACATGGTTATGGAAGATCTTCTGCCCTGAT GCTGTTGAGTTGGGTTACCGCTTCTTCTTCACCAGCGGCCGTCCCGGAGAGCCAGCTCCCAGCAAGAAGATGCTTGATATGACCGGAGCTCAGGGATTAA TGTATCCTGATTCCATCCTCAACCCTGCCAAGACAGCTTAG
AA sequence Show only first row Show all	>Lus10032556 pacid=23146363 polypeptide=Lus10032556 locus=Lus10032556.g ID=Lus10032556.BGIv1.0 annot-version=v1.0 MDLVHTFLNLVAPPFTFFSLCFLLPPYFLFKTFTSAVSYVFSENVSGKVVLITGASSGIGEHLAYEYGSRGACLALVARREKGLREVVDLALELGSPQVV MIVGDVQKVDDCRRIVNETINHFGRLDHLVNNAGISSVCFFEDATDVTNFRTIMDTNFWGSAYITQFAIPYLRQTAGKIIALSSAGSWLPEPRMTIYNAS KAAMVAFFETLRVELSPDIGVLIVTPGYIESELTQGKFMTAEGRMDVDQDLRDEKFGPIPVASVVSTAKAIVNSACRGDKYLTVPAWVRTTWLWKIFCPD AVELGYRFFFTSGRPGEPAPSKKMLDMTGAQGLMYPDSILNPAKTA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10032556 [exp]	0	1
					Lus10025204 [exp]	7.6	0.8472
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10022812 [exp]	9.3	0.8398
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10014163 [exp]	15.0	0.8219
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10036715 [exp]	17.7	0.8067
AT5G48290			Heavy metal transport/detoxifi...		Lus10016061 [exp]	21.9	0.8074
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	22.1	0.7886
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034414 [exp]	23.1	0.7779
AT5G48290			Heavy metal transport/detoxifi...		Lus10016062 [exp]	24.7	0.7888
AT2G17080			Arabidopsis protein of unknown...		Lus10012368 [exp]	25.5	0.7881
AT5G48290			Heavy metal transport/detoxifi...		Lus10025181 [exp]	30.0	0.7900

Compare expression of checked genes

Lus10032556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.