Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04730 238 / 2e-70 CTF18 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G22010 43 / 0.0004 ATRFC1 replication factor C 1, replication factor C1 (.1) AT1G21690 42 / 0.0004 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043134 [exp] 371 / 6e-120 AT1G04730 946 / 0.0 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028543 [exp] 46 / 3e-05 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10035108 [exp] 46 / 5e-05 AT1G77620 536 / 4e-171 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013372 [exp] 45 / 0.0001 AT5G22010 1128 / 0.0 replication factor C 1, replication factor C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G050300 [exp] 269 / 7e-82 AT1G04730 1058 / 0.0 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G213900 [exp] 51 / 8e-07 AT5G22010 1117 / 0.0 replication factor C 1, replication factor C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10032615 pacid=23146232 polypeptide=Lus10032615 locus=Lus10032615.g ID=Lus10032615.BGIv1.0 annot-version=v1.0 ATGGATGATATCAATTGCAAACCTGCACTGTCTTCTAGTCGACCCTATCAACGTTCTTTTCGAAAAGGCGGAGCAATTGGCTTTCAACAAGGTCTAGTGT ATATAGTTAATGGCTTACACACTTTTCCGGTTGGAATTCGAAGAAAACTACAATGCTTATCTGATATATCATCGTTTGGTAGTTCAGGCATTGAAGTTCA GACCGATGCTGTTGTGCCTCAAACAGGCTTGGTTTCTGAAAAGCTTTGGGTCGATAAATATGCTCCAAAGTCGTTCACTGAGTTACTGAGTGATGAGCAA ACAAATAGGGAGGTTTTTCTGTGGTTGAAACAGTGGGATTCTTGTGTTTTTGGATCTGAAATTATAAGTACGTCAGATGAGGTTCTGTCTGCTTTGAGGC GTCACTCGACTGTTCCTCAACGCCAGAAAGTTTCAGATACAGCTTTCACGAGGAAAACCAGAGGATATAAAAGGGGTAATGGAAATGATAGACGGTTCCA TCTGTCGTCAAATTTTGAAAATGACAATTCTAAACAAACGCAGGACGCTGCAAACAAGAAAACAAGGCCTAGCATTATTCTCTCACTCTGTGGCCCTCCA GGACTTGGAAAGACGACTCTTGCACATGTAGCTGCTGATCATTGTGGATATCGAGTTGTGGAGGTAAATGCAAGTGATGACCGGTCATCCTCTTCCATTG AAGCCAAAATCCTGGATGTGGTCCAGATGAACTCCGTGACAGCAGACTCGAGGCCCAAATGTTTGGTTAGTTACACGTTCCTTAGTGTATCACTATCAAG ACCTGTGAGCTGGAAGCACCGAACAATGTTAGCAGAGAAACTGGAATTGCTGAAGGCTTGGCATAACAAAATGCCACCGCATATATTCCGGCATTTATCC ACGAAGTCCTTTGCTGAAGATTCTGTATCTTCTTTGTTGCATATTCTATCACCCTCAACCATAAGACCGGTAGCGTCACACTTACACACCGATCAGGAAA AGAAGGACATGGACCAGTTAGTCAGCAGGATGGTGTCTTATTCTGTAACATATAAGACCGTAAAGCCCAATCCTTTCTCCAGTAACCCAGATCATCATGC AGCTTCAGATGTACCAACGCTTAATTTCGATCCTCCCATCACAGAGTTCATCTGCTTCAAGGTCCAAGTTTTGCTTTAA
AA sequence Show only first row Show all	>Lus10032615 pacid=23146232 polypeptide=Lus10032615 locus=Lus10032615.g ID=Lus10032615.BGIv1.0 annot-version=v1.0 MDDINCKPALSSSRPYQRSFRKGGAIGFQQGLVYIVNGLHTFPVGIRRKLQCLSDISSFGSSGIEVQTDAVVPQTGLVSEKLWVDKYAPKSFTELLSDEQ TNREVFLWLKQWDSCVFGSEIISTSDEVLSALRRHSTVPQRQKVSDTAFTRKTRGYKRGNGNDRRFHLSSNFENDNSKQTQDAANKKTRPSIILSLCGPP GLGKTTLAHVAADHCGYRVVEVNASDDRSSSSIEAKILDVVQMNSVTADSRPKCLVSYTFLSVSLSRPVSWKHRTMLAEKLELLKAWHNKMPPHIFRHLS TKSFAEDSVSSLLHILSPSTIRPVASHLHTDQEKKDMDQLVSRMVSYSVTYKTVKPNPFSSNPDHHAASDVPTLNFDPPITEFICFKVQVLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10032615 [exp]	0	1
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	2.2	0.9465
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10007624 [exp]	3.0	0.9290
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	3.5	0.9411
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	5.9	0.9222
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10005417 [exp]	6.5	0.9106
AT2G39300			unknown protein		Lus10014034 [exp]	10.4	0.7988
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	10.6	0.9012
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023455 [exp]	11.2	0.8848
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	11.3	0.9239
AT5G20860			Plant invertase/pectin methyle...		Lus10017665 [exp]	13.0	0.9185

Compare expression of checked genes

Lus10032615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.