Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47160 1026 / 0 AtBOR1, BOR1 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) AT3G62270 1022 / 0 HCO3- transporter family (.1) AT3G06450 954 / 0 HCO3- transporter family (.1.2) AT1G15460 765 / 0 ATBOR4 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) AT1G74810 743 / 0 BOR5 HCO3- transporter family (.1) AT4G32510 715 / 0 HCO3- transporter family (.1) AT5G25430 711 / 0 HCO3- transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043101 [exp] 1254 / 0 AT2G47160 951 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) Lus10038060 [exp] 1001 / 0 AT3G62270 1155 / 0.0 HCO3- transporter family (.1) Lus10009995 [exp] 982 / 0 AT3G62270 1054 / 0.0 HCO3- transporter family (.1) Lus10008083 [exp] 753 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10013116 [exp] 752 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10019443 [exp] 696 / 0 AT1G15460 888 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10043299 [exp] 588 / 0 AT1G15460 749 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G100300 [exp] 1117 / 0 AT3G62270 1091 / 0.0 HCO3- transporter family (.1) Potri.002G191000 [exp] 1017 / 0 AT2G47160 1152 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) Potri.014G116000 [exp] 1009 / 0 AT3G62270 1113 / 0.0 HCO3- transporter family (.1) Potri.015G077600 [exp] 991 / 0 AT3G62270 1068 / 0.0 HCO3- transporter family (.1) Potri.012G081800 [exp] 989 / 0 AT3G62270 1067 / 0.0 HCO3- transporter family (.1) Potri.001G174500 [exp] 785 / 0 AT1G15460 959 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.003G059700 [exp] 773 / 0 AT1G15460 964 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.018G031700 [exp] 762 / 0 AT1G15460 947 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.006G249800 [exp] 762 / 0 AT1G15460 924 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.006G154700 [exp] 758 / 0 AT1G15460 894 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00955 [flax] [poplar] HCO3_cotransp HCO3- transporter family
Representative CDS sequence Show only first row Show all	>Lus10032651 pacid=23146214 polypeptide=Lus10032651 locus=Lus10032651.g ID=Lus10032651.BGIv1.0 annot-version=v1.0 ATGGAGGAAAGCTTTCTACCATTCCGTGGAATCAAGAACGACCTTCAGGGAAGATTGGCTTGCTACAAACAAGATTGGACTGGCGGTTTCAGCTCTGGGT TTAGTATTTTGGCACCCACAACCTACATATTCTTTGCCTCTGCAATCCCAGTGATTTCGTTTGGAGAACAATTGGAAAGAGAAACTGATGGAGCCCTTAC TGCAGTTCAGACCTTGGCTTCCACTGCACTGTGTGGAATCATCCACTCCATCATCGGAGGGCAGCCATTGCTGATACTTGGTGTTGCAGAACCCACGGTG ATCATGTACACTTTCATGTACAAGTTTGCTGCTGCTAGACCTGAATTGGGCTCCAAGCTCTTCCTTGCTTGGACTAGCTGGGTGTGCGTGTGGACTGCTA TCTTGCTCTTCCTACTCTCCATCTTAGGAGCATGCTCCATTATCAATAGGTTTACCCGTCTTGCCGGAGAGTTGTTTGGCCTTCTTATTGCCATGCTTTT CATGCAGGAGGCTATCAAGGGGCTCATTGATGAGTTTCGGATTCCAGAAAGAGAGGATCCGAATGCAGTTGAGTTTCAACTATCGTGGAGATTCGCAAAC GGGATGTTTGCCCTGGTCCTTTCATTTGGCCTTCTTCTCACTGCCCTGAAAAGCAGAAAGGCAAGGTCTTGGCGATATGGCTGGCTGAGGGGCTTCCTAG CAGATTATGGCGTACCGTTCATGGTTCTACTATGGACTGGACTTTCCTACATACCAACTGGAACAACGCCGAATGGTATTCCAAGACGTCTCTTTAGCCC GAACCCATGGTCATCTGGTGCCTACAAGAACTGGACTGTGATAACGGAGATGCTAGATGTACCGGTCATTTACATAATCGGAGCTTTCATCCCAGCAACG ATGATAGCAGTGCTCTATTACTTTGATCACAGCGTAGCATCTCAATTGGCTCAGCAGAAAGAATTCAACTTGAGGAAACCACCTTCCTTCCATTATGATT TACTTCTTCTAGGATTCATGGTCATACTGTGTGGTCTGCTTGGAATCCCTCCGGCTAATGGAGTTATCCCACAGTCTCCAATGCACACCAAGAGTTTGGC TACTTTGAAGCATCAGTTACTGCGTAGAAAGCTTTTGGCTGCTGCACGTAAGCGAATGAGCGAGAATGCAAGCTTGGGACAAGTGTATGCAAGTATGAAA GAGGCTTATCAACAGGCACAAAGCCCATGCGTCCCCCTGGGATCGTCTCCTCCGGGTTTGAAGGAACTGAAAGACTCAACTCTTCAGATGGCTGCAAGAC TCGGAAGCTTCAATGCTCCAGTGGACGAGACGATATTCGACATTGAGAAGGAGATTGACAACCTCTTGCCCGTTGAGGTGAAAGAACAGCGGCTCAGTAA CTTGCTTCAGTCTGTAATGGTAGGAGGATGTGTTGGGGCCATGCCTTTCATTAAAAAGATCCCAACTTCCGTGTTATGGGGTTATTTCGCATTCATGGCT ATCGAAAGCTTGCCGGGCAACCAGTTCTGGGAAAGGATCTTGCTCATCTTCACAGCTCCCAGCAGGAGACACAAAGTGTTGGAAGAGTATCATGCCACTT TCCTGGAAACAGTACCTTTCAAGACTATCACAATGTTCACTCTGTTTCAAGCTGGATATCTGCTGGTATGCTTTGGCATCACATGGATCCCAATAGCCGG CGTTCTTTTCCCTCTAATGATCATGCTTCTAGTTCCCGTGAGACAATACATGCTGCCCCAGTTCTTCAAAGGTGCACACCTCCAAGACTTGGATGCTGCG GAGTACGAAGAGATCCCCGAGATGCCATTCAACTCAACGACAGATATAGAGATGCTGAGCCGGAGAGCTTCATTCAATGATGACAGTGAGATGTTGGACG GGATGATCACTCGAAGCAGAGGGGAGATAAAACGGGCGTTCAGTGGACCGATGTTGTTAGCAACAGCATCGGGGGAAGAATTGATGAGCATTGAGAGTCC TCAAGTTTCGGATTTGGGAAATGTGACTCGTTACAGAGGGGATCTGAGCCCTCGCCAAGGGGGTAAAGGAGGAGGAGGAGGAGGAGGATCATTTACATCG AGGCCATCTAACTTGGGGAAGACAGGATAG
AA sequence Show only first row Show all	>Lus10032651 pacid=23146214 polypeptide=Lus10032651 locus=Lus10032651.g ID=Lus10032651.BGIv1.0 annot-version=v1.0 MEESFLPFRGIKNDLQGRLACYKQDWTGGFSSGFSILAPTTYIFFASAIPVISFGEQLERETDGALTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTV IMYTFMYKFAAARPELGSKLFLAWTSWVCVWTAILLFLLSILGACSIINRFTRLAGELFGLLIAMLFMQEAIKGLIDEFRIPEREDPNAVEFQLSWRFAN GMFALVLSFGLLLTALKSRKARSWRYGWLRGFLADYGVPFMVLLWTGLSYIPTGTTPNGIPRRLFSPNPWSSGAYKNWTVITEMLDVPVIYIIGAFIPAT MIAVLYYFDHSVASQLAQQKEFNLRKPPSFHYDLLLLGFMVILCGLLGIPPANGVIPQSPMHTKSLATLKHQLLRRKLLAAARKRMSENASLGQVYASMK EAYQQAQSPCVPLGSSPPGLKELKDSTLQMAARLGSFNAPVDETIFDIEKEIDNLLPVEVKEQRLSNLLQSVMVGGCVGAMPFIKKIPTSVLWGYFAFMA IESLPGNQFWERILLIFTAPSRRHKVLEEYHATFLETVPFKTITMFTLFQAGYLLVCFGITWIPIAGVLFPLMIMLLVPVRQYMLPQFFKGAHLQDLDAA EYEEIPEMPFNSTTDIEMLSRRASFNDDSEMLDGMITRSRGEIKRAFSGPMLLATASGEELMSIESPQVSDLGNVTRYRGDLSPRQGGKGGGGGGGSFTS RPSNLGKTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62270			HCO3- transporter family (.1)		Lus10032651 [exp]	0	1
AT2G47160		AtBOR1, BOR1	REQUIRES HIGH BORON 1, HCO3- t...		Lus10043101 [exp]	1.0	0.8687
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10009227 [exp]	2.8	0.8324
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014369 [exp]	4.9	0.8278
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Lus10032297 [exp]	6.0	0.8207
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10037994 [exp]	8.1	0.8150
AT1G71690			Protein of unknown function (D...		Lus10003512 [exp]	19.3	0.7967
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10037147 [exp]	21.4	0.7882
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10020526 [exp]	21.5	0.7714
AT3G54000			unknown protein		Lus10021105 [exp]	22.2	0.7495
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10023866 [exp]	23.7	0.7811

Compare expression of checked genes

Lus10032651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.