Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54190 545 / 0 PORA protochlorophyllide oxidoreductase A (.1.2) AT4G27440 522 / 0 PORB protochlorophyllide oxidoreductase B (.1.2) AT1G03630 509 / 0 PORC ,POR C protochlorophyllide oxidoreductase C (.1.2) AT4G23430 100 / 4e-24 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G02540 94 / 7e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 92 / 3e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G37540 84 / 1e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G11410 83 / 3e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 78 / 2e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 77 / 6e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043090 [exp] 596 / 0 AT5G54190 652 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10039810 [exp] 503 / 0 AT5G54190 603 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10018579 [exp] 503 / 1e-180 AT5G54190 600 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10024647 [exp] 98 / 1e-23 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032280 [exp] 99 / 3e-23 AT4G11410 461 / 5e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035480 [exp] 97 / 3e-23 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 97 / 8e-23 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035481 [exp] 93 / 1e-21 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10032282 [exp] 92 / 3e-21 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403300 [exp] 546 / 0 AT5G54190 555 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Potri.011G122400 [exp] 542 / 0 AT5G54190 592 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Potri.013G135500 [exp] 514 / 0 AT1G03630 604 / 0.0 protochlorophyllide oxidoreductase C (.1.2) Potri.006G083900 [exp] 101 / 9e-25 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G143600 [exp] 99 / 9e-24 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 96 / 7e-23 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 94 / 4e-22 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 91 / 3e-21 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G128700 [exp] 87 / 1e-19 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G087800 [exp] 81 / 3e-17 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10032665 pacid=23146320 polypeptide=Lus10032665 locus=Lus10032665.g ID=Lus10032665.BGIv1.0 annot-version=v1.0 ATGGCCTGCAGGGACTTCCTCAAGGCGCAGCGAGCAGCCAAATCCGCCGGGATGGATAAAGAGGACTACACCGTGATGCATCTTGATCTGGCTTCCTTGG ACAGTGTTCGCCAGTTTGTTCGTAACTTCAGGATGTCAGGGATGCCGCTTGATGTTCTGGTGTGCAATGCTGCTGTCTATCTCCCTACTGCTAAGGAACC CACGTTTACCGCAGAAGGGTTCGAGCTTAGCGTGGGAACGAACCATCTGGGACATTTCTTGCTGTCTAGATTGCTCGTTGATGATATGAAGCAGTCTGAT TATCCTTCCAAGCGCCTCATCATTGTAGGCTCGATTACAGGAAATACAAATACGCTGGCAGGAAATGTTCCACCAAAGGCCAACCTGGGGGACATGAGGG GATTAGCAGGCGGGTTAAACGCATCGAACAGCTCAGCCATGATCGACGGAGGAGATTTCGACGGTGCTAAGGCTTACAAGGACAGCAAAGTATGCAACAT GCTGACGATGCAGGAGTTCCACAGGCGTTACCACGAGGAAACAGGCATCACATTCGCTTCCCTCTATCCGGGCTGCATTGCGACGACAGGGTTGTTCAGG GAGCACATTCCTCTGTTCAGGCTTCTCTTCCCTCCTTTCCAGAAGTACATCACCAAGGGGTACGTGTCCGAGGACGAAGCCGGGAAAAGGCTTGCTCAGG TGGTCGCAGACCCTAGCTTGACGAAATCGGGGGTGTACTGGAGCTGGAACAAGGAGTCGGCGAGCTTTCAGAACCAGTTGTCTCAGGAAGCTAGCGATGT CGACAAGGCGCGTAAAGTGTGGGAGATCAGTGAGAAGCTCGTTGGTTTGGCTTAG
AA sequence Show only first row Show all	>Lus10032665 pacid=23146320 polypeptide=Lus10032665 locus=Lus10032665.g ID=Lus10032665.BGIv1.0 annot-version=v1.0 MACRDFLKAQRAAKSAGMDKEDYTVMHLDLASLDSVRQFVRNFRMSGMPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLVDDMKQSD YPSKRLIIVGSITGNTNTLAGNVPPKANLGDMRGLAGGLNASNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFR EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVADPSLTKSGVYWSWNKESASFQNQLSQEASDVDKARKVWEISEKLVGLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10032665 [exp]	0	1
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10043090 [exp]	1.0	0.9776
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10006751 [exp]	2.0	0.9462
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	7.1	0.9392
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10041875 [exp]	7.9	0.8882
AT5G36930			Disease resistance protein (TI...		Lus10018616 [exp]	9.2	0.9075
AT4G01310			Ribosomal L5P family protein (...		Lus10007915 [exp]	9.7	0.9305
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10041602 [exp]	10.0	0.9241
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10032449 [exp]	11.0	0.9119
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Lus10013023 [exp]	11.2	0.9113
AT4G30845			unknown protein		Lus10026098 [exp]	12.1	0.9135

Compare expression of checked genes

Lus10032665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.