Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42630 174 / 2e-52 GARP KAN4, KANADI4, ATS KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) AT4G17695 132 / 7e-36 GARP KAN3, KANADI3 KANADI 3, Homeodomain-like superfamily protein (.1) AT5G16560 131 / 6e-35 GARP KAN1, KAN KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) AT1G32240 131 / 7e-35 GARP KAN2, KANADI2 KANADI 2, Homeodomain-like superfamily protein (.1) AT2G38300 89 / 7e-20 GARP myb-like HTH transcriptional regulator family protein (.1) AT2G42660 86 / 3e-19 GARP Homeodomain-like superfamily protein (.1) AT1G14600 85 / 5e-19 GARP Homeodomain-like superfamily protein (.1) AT2G02060 84 / 1e-18 GARP Homeodomain-like superfamily protein (.1) AT2G40260 86 / 2e-18 GARP Homeodomain-like superfamily protein (.1) AT4G04580 79 / 2e-17 GARP Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011660 [exp] 283 / 9e-95 AT5G42630 138 / 2e-39 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Lus10035387 [exp] 130 / 3e-36 AT1G32240 222 / 1e-71 KANADI 2, Homeodomain-like superfamily protein (.1) Lus10030989 [exp] 130 / 3e-34 AT1G32240 229 / 6e-71 KANADI 2, Homeodomain-like superfamily protein (.1) Lus10002207 [exp] 89 / 4e-20 AT2G38300 171 / 9e-51 myb-like HTH transcriptional regulator family protein (.1) Lus10012239 [exp] 90 / 5e-20 AT2G38300 170 / 3e-50 myb-like HTH transcriptional regulator family protein (.1) Lus10029225 [exp] 86 / 8e-20 AT2G38300 110 / 5e-30 myb-like HTH transcriptional regulator family protein (.1) Lus10040945 [exp] 88 / 3e-19 AT2G40260 159 / 2e-45 Homeodomain-like superfamily protein (.1) Lus10007513 [exp] 86 / 9e-19 AT2G40260 145 / 3e-40 Homeodomain-like superfamily protein (.1) Lus10001149 [exp] 85 / 1e-18 AT2G40260 119 / 1e-30 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G037200 [exp] 182 / 1e-54 AT5G42630 209 / 6e-66 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Potri.002G130200 [exp] 160 / 3e-46 AT5G42630 199 / 6e-62 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Potri.017G137600 [exp] 131 / 2e-34 AT5G16560 256 / 8e-81 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.003G096300 [exp] 129 / 2e-34 AT1G32240 224 / 1e-69 KANADI 2, Homeodomain-like superfamily protein (.1) Potri.015G031600 [exp] 128 / 2e-33 AT5G16560 176 / 1e-50 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.012G042100 [exp] 127 / 6e-33 AT5G16560 193 / 6e-57 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.004G082400 [exp] 127 / 6e-33 AT5G16560 233 / 7e-72 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.001G137600 [exp] 124 / 3e-32 AT1G32240 216 / 6e-67 KANADI 2, Homeodomain-like superfamily protein (.1) Potri.008G071700 [exp] 98 / 9e-23 AT2G40260 166 / 2e-47 Homeodomain-like superfamily protein (.1) Potri.009G075100 [exp] 96 / 4e-22 AT2G38300 162 / 4e-47 myb-like HTH transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10032746 pacid=23159001 polypeptide=Lus10032746 locus=Lus10032746.g ID=Lus10032746.BGIv1.0 annot-version=v1.0 ATGATGATGATGAGAAATACAAGTATTGTTAGCGGTGCCGCTTTATTTCCTGATCTCTCCCTCCAGATCAGCCCACCCTCCGACCACCTCCTTATGAAAT CCGCGGCAGCCACCTTGTATTACAGCGACACTTCCACTACGGATTCCGGCAGCAGTGGAAGCGACTTCAGCCGAGATATTATTATTAATAATAATATTGA GCCGACTCTTAACCTCGGATCATTAGATCATCATCATCACCATCTTCTTCTTCACCACCAGTGCTTGGGAATACCAAGAGACTTGAACCATCAGTACCAT CCCCATATCTACGGCCGGGATTTCAAGAGGAGTAGTGGCAGAAGCGCAATCAAAGGTGGAGGAGGAAGGAGGAGCGTCAGAGCTCCCAGGATGAGGTGGA CCACCACTCTCCATGCTCACTTTGTTCACGCCGTTCAGCTTCTCGGCGGCCATGAAAGAGCGACGCCCAAATCGGTCCTGGAGCTGATGAACGTCAAAGA TCTAACCCTTGCCCATGTCAAGAGCCATTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAATCACCATTACTACCTGGTGGAGGAGGGCATGTAGTG AGTCATACCAGTGATGATGACAACATTACTAATAACAATGGAGAAGAAGCTATTATTGATTTGGAAGCAGCTAAAGAAGAAGAAGAAGAAGATGGAGATG GATACAGAAAATTATTAGCTGCTGATCCAGATTCTCCTCCTCAACCAACCATTACTGAAAATGTGTCGTGGTCATCATCCATTGACAGAGACAGCAACAA CATTAGATTATCACGTCCATTGACTCATTCTCACAATAACGGGCATGACATAGCTACAAAGGAGGAGAAGGGAGGAGAGCTAAGGAGGTTGACAAGGACT TCAGAGATGTTGGTAAACCTAGAATTCACACTTGGAAGGCCAAGCTGGCAGAGGGATGACGTCGTCGACTACGTAGCTGAATCTTCAAATTATGACTTGA CCCTTCTCAACTGTTAA
AA sequence Show only first row Show all	>Lus10032746 pacid=23159001 polypeptide=Lus10032746 locus=Lus10032746.g ID=Lus10032746.BGIv1.0 annot-version=v1.0 MMMMRNTSIVSGAALFPDLSLQISPPSDHLLMKSAAATLYYSDTSTTDSGSSGSDFSRDIIINNNIEPTLNLGSLDHHHHHLLLHHQCLGIPRDLNHQYH PHIYGRDFKRSSGRSAIKGGGGRRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSPLLPGGGGHVV SHTSDDDNITNNNGEEAIIDLEAAKEEEEEDGDGYRKLLAADPDSPPQPTITENVSWSSSIDRDSNNIRLSRPLTHSHNNGHDIATKEEKGGELRRLTRT SEMLVNLEFTLGRPSWQRDDVVDYVAESSNYDLTLLNC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10032746 [exp]	0	1
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10004088 [exp]	4.2	0.9089
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10027795 [exp]	4.2	0.9020
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10036116 [exp]	4.9	0.9191
					Lus10011277 [exp]	7.7	0.8651
AT1G67550		URE	urease (.1)		Lus10015814 [exp]	7.7	0.9124
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	8.1	0.9136
AT3G03773			HSP20-like chaperones superfam...		Lus10002623 [exp]	8.1	0.8987
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10039144 [exp]	8.7	0.8570
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030918 [exp]	9.0	0.8858
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	9.6	0.9164

Compare expression of checked genes

Lus10032746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.