Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47670 881 / 0 Transmembrane amino acid transporter family protein (.1) AT4G35180 354 / 2e-117 LHT7 LYS/HIS transporter 7 (.1) AT1G24400 303 / 6e-98 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT5G40780 286 / 2e-91 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G67640 279 / 2e-88 Transmembrane amino acid transporter family protein (.1) AT1G25530 274 / 1e-86 Transmembrane amino acid transporter family protein (.1) AT1G48640 274 / 2e-86 Transmembrane amino acid transporter family protein (.1) AT1G61270 273 / 4e-86 Transmembrane amino acid transporter family protein (.1) AT3G01760 258 / 4e-80 Transmembrane amino acid transporter family protein (.1) AT1G71680 231 / 4e-70 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011668 [exp] 971 / 0 AT1G47670 918 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003338 [exp] 543 / 0 AT1G47670 565 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10025113 [exp] 530 / 0 AT1G47670 529 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10023971 [exp] 528 / 0 AT1G47670 526 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10015997 [exp] 429 / 3e-146 AT1G47670 450 / 2e-154 Transmembrane amino acid transporter family protein (.1) Lus10022642 [exp] 396 / 1e-133 AT4G35180 431 / 7e-148 LYS/HIS transporter 7 (.1) Lus10003339 [exp] 389 / 7e-131 AT1G47670 410 / 9e-140 Transmembrane amino acid transporter family protein (.1) Lus10022329 [exp] 312 / 2e-101 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041581 [exp] 312 / 4e-101 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036500 [exp] 933 / 0 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 594 / 0 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 525 / 0 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) Potri.009G140800 [exp] 508 / 1e-176 AT1G47670 509 / 6e-177 Transmembrane amino acid transporter family protein (.1) Potri.004G181100 [exp] 464 / 1e-159 AT1G47670 384 / 2e-128 Transmembrane amino acid transporter family protein (.1) Potri.004G181000 [exp] 453 / 2e-156 AT1G47670 405 / 5e-138 Transmembrane amino acid transporter family protein (.1) Potri.001G335300 [exp] 306 / 4e-99 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 295 / 7e-95 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 286 / 1e-91 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G179000 [exp] 284 / 1e-90 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10032751 pacid=23159010 polypeptide=Lus10032751 locus=Lus10032751.g ID=Lus10032751.BGIv1.0 annot-version=v1.0 ATGGAGGAGAGGCCGGAAACTGAGCTGATATCTATCCCGGCGACACCACGCGCGTCCACGCCGGAGATACTGACGCCGTCGGGGCAGAGGTCTCCCGGGC GACCGCCGTCCAAGGATGCCAAGTCGTCAAATGCGTGGACTCCGACCTCGTTCATCTCGCCTAGGTTCCTGAGTCCGATAGGAACTCCGATGAAGAGGGT GCTGGTTAACATGAAGGGGTACTTGGAGGAAGTTGGGCATCTGACGAAGCTCAACCCTCAAGACGCTTGGCTGCCCATTACAGAGTCCAGAAACGGGAAT GCTCACTACGCCGCGTTTCATAACCTCAATGCCGGCGTCGGCTTCCAGGCACTCGTTTTGCCTGTCGCTTTCGCTTACCTTGGCTGGAGTTGGGGAATAC TGTCCTTAACGATAGCCTATTGCTGGCAGCTTTACACTCTATGGATACTAGTCCAATTACACGAAGCAGTTCCAGGGAAGAGATACAACCGATACGTGGA ACTTGCACAAGCTGCATTTGGGGAAAAATTGGGTCCTTGGCTTGCAGTGTTCCCAACTGTATATTTATCAGCTGGAACTGCAACAGCATTGATAATCGTT GGAGGGGAGACCATGAAACTCTTCTTTCAGATAGTTTGTGGCCCACTATGTTCATCGGATCCCTTGACCACGGTGGAGTGGTATCTTGTGTTCACTTCTC TGTGCATTGTTCTGTCACAGCTCCCAAACCTCAATTCAATAGCTGGACTTTCTCTGATTGGAGCCATAACAGCCATTACTTATTCAACAATGGTGTGGGT GCTTTCTGTGAGTGAGCAGAGGCCACCTTCAATCTCTTATGAACCTCTTTCTCTCCCATCTCCAACTGCATCCGTCTTCTCTGTTCTCAACGCCCTTGGA ATTGTAGCATTTGCATTCAGAGGACACAATCTCGTTCTCGAGATTCAGTCAACAATGCCATCTACCTTCAAGCACCCAGCTCATGTTCCAATGTGGAGAG GAGCTAAGGTTGCATATTTCTTCATAGCGTTGTGCCTCTTCCCTGTAGCAATTGGTGGCTTCTGGGCTTATGGAAACCTTATGCCGTCAGGAGGGATTCT GAATGCACTATATGGATTTCACAGCCACGACATTCCACGGGGGCTTCTTGCTATGACATGCCTTCTAGTTGTCTTCAACTGCTTAAGCAGTTTCCAGATA TACTCAATGCCAGTCTTCGACAGCTTCGAAGCGAGTTACACCAGCCGCACAAACCGTCCATGCTCGATATGGGTTCGGTCAGGATTCCGAGTGTTCTACG GGTTTGTCAACTTCTTCATAGGCGTGGCACTCCCTTTCCTGTCCAGTCTTGCTGGTCTGCTTGGAGGATTGACACTCCCAGTCACATTTGCATACCCTTG CTTCATGTGGGTTCTGATAAAAAAGCCTTCAAAGTACAGCTTCAACTGGTACTTCAATTGGATCCTGGGTTGGCTTGGGATTGCATTCAGCTTGGCCTTC ACCATTGGAGGTGTGTGGAGCATGGTCAACAATGGACTCAAGTTGAAGTTTTTCAAGCCTAATTAA
AA sequence Show only first row Show all	>Lus10032751 pacid=23159010 polypeptide=Lus10032751 locus=Lus10032751.g ID=Lus10032751.BGIv1.0 annot-version=v1.0 MEERPETELISIPATPRASTPEILTPSGQRSPGRPPSKDAKSSNAWTPTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGN AHYAAFHNLNAGVGFQALVLPVAFAYLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGEKLGPWLAVFPTVYLSAGTATALIIV GGETMKLFFQIVCGPLCSSDPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAITYSTMVWVLSVSEQRPPSISYEPLSLPSPTASVFSVLNALG IVAFAFRGHNLVLEIQSTMPSTFKHPAHVPMWRGAKVAYFFIALCLFPVAIGGFWAYGNLMPSGGILNALYGFHSHDIPRGLLAMTCLLVVFNCLSSFQI YSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVNFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPSKYSFNWYFNWILGWLGIAFSLAF TIGGVWSMVNNGLKLKFFKPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47670			Transmembrane amino acid trans...		Lus10032751 [exp]	0	1
AT1G47670			Transmembrane amino acid trans...		Lus10011668 [exp]	1.0	0.9077
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10024016 [exp]	1.4	0.9036
AT3G57890			Tubulin binding cofactor C dom...		Lus10012025 [exp]	8.1	0.8117
AT1G19870		IQD32	IQ-domain 32 (.1)		Lus10033167 [exp]	8.4	0.8293
AT2G40480			Plant protein of unknown funct...		Lus10034211 [exp]	10.5	0.8404
AT3G57890			Tubulin binding cofactor C dom...		Lus10016279 [exp]	10.8	0.8259
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10026066 [exp]	12.3	0.8270
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10010647 [exp]	16.0	0.8628
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10040638 [exp]	17.3	0.7844
AT1G35710			Protein kinase family protein ...		Lus10003612 [exp]	17.7	0.8428

Compare expression of checked genes

Lus10032751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.