Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33300 543 / 0 ADR1-L1 ADR1-like 1 (.1.2) AT5G04720 480 / 4e-160 PHX21, ADR1-L2 PHOENIX 21, ADR1-like 2 (.1) AT1G33560 447 / 6e-148 ADR1 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G47280 369 / 1e-119 ADR1-L3 ADR1-like 3 (.1) AT5G66910 191 / 2e-51 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G66900 175 / 5e-46 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G26470 141 / 2e-38 Powdery mildew resistance protein, RPW8 domain (.1) AT3G50950 95 / 5e-20 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT4G27190 93 / 2e-19 NB-ARC domain-containing disease resistance protein (.1) AT1G61190 89 / 3e-18 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021769 [exp] 678 / 0 AT4G33300 583 / 0.0 ADR1-like 1 (.1.2) Lus10021768 [exp] 201 / 2e-61 AT3G26470 113 / 5e-32 Powdery mildew resistance protein, RPW8 domain (.1) Lus10020779 [exp] 204 / 3e-56 AT5G66900 434 / 5e-141 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10022464 [exp] 191 / 2e-51 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10007359 [exp] 152 / 2e-38 AT5G66900 473 / 3e-154 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10039540 [exp] 111 / 6e-25 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10034761 [exp] 101 / 2e-22 AT5G66900 197 / 1e-54 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10039509 [exp] 102 / 3e-22 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 97 / 2e-20 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G035700 [exp] 692 / 0 AT4G33300 889 / 0.0 ADR1-like 1 (.1.2) Potri.002G129300 [exp] 689 / 0 AT4G33300 902 / 0.0 ADR1-like 1 (.1.2) Potri.007G039300 [exp] 195 / 5e-53 AT5G66900 540 / 0.0 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039000 [exp] 185 / 3e-50 AT5G66900 343 / 2e-107 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039100 [exp] 185 / 1e-49 AT5G66900 474 / 3e-156 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038700 [exp] 170 / 2e-44 AT5G66900 481 / 3e-158 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.001G422800 [exp] 116 / 1e-26 AT4G27190 282 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Potri.005G119800 [exp] 112 / 2e-25 AT3G50950 1005 / 0.0 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.001G429430 [exp] 111 / 5e-25 AT4G27190 292 / 5e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429890 [exp] 110 / 1e-24 AT4G27190 265 / 2e-73 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10032759 pacid=23159027 polypeptide=Lus10032759 locus=Lus10032759.g ID=Lus10032759.BGIv1.0 annot-version=v1.0 ATGCCGGTAACGGAATTTTTCGCCGGCGAGATCGCCACGGAGCTTCTCAAAACCCTGTTCACAATCTCCCGGCGAGCCTGCCTCTGTAAATCTACCGCCG ACTCCCTGATTTCAAGCATCAACGACCTCCTACCAGTCATCCAGGAGATCAAATACTCAGGCGTCGAGCTTCCCGCCTTCCGTCAATTCCAGCTCGACGG CCTCTCAGAAACCCTACGAAACGGGCTCGAGCTTGCCGGGAAGGCCCTCGGTTGCAGCCGATGGAACGTCTACAAAATGCTCCATCTCGCCAGAAGGATG GAGAAGCTGGACAAGCGGATCTCGGTGTTCCTGAAGGGCCCGATTCAGGCTCACGTGCTCGCCGATGTTCATCACCTGAGGTTCGATTCGGTGGAGCGGT TCGATAGGTTGGATGGTTCGCAACGGAGGCTGGAGGAAAGGCTGGAATCGATGAAGATTGGTGTCAGCGGCGGAGGATGGTTGGAGGAGGCGGTGAAGAG AGTGGATATGGAGTGCAGAGACGATCAGGGTAAATTCCACTTCAAGAACAGGATACTTTTCCTGACGGTTTCGCAGTCCCCTGATGTGGAGCAGCTGAGG GCTAAAATTCGGGGGTTTATTGCAGAAGGTGATGATATCAATTTTGGCTGCAACGACGGGTTCTCAGAAGCTGGATTGGAAGACAGACGTCGAATTTTGA TTGTTCTAGACGATGTCTGGTCTCTCTCGGTGCTTGAGCAGTTGATTTTTAGGGTTCATGGATGCAAAACCCTTGTCGTCTCGCGATTCAAGTTCCCGAA TGTGCTTAAAGCTACTTATGAAGTGGAGCTGCTGAAGGGAGATGAAGCAATTTCCTTGTTCTTCCAATCTGCTTTTGAACAGTGTTCTATCCCTCCTGGT ACCGATGCAAGCTTGGTCAAGCAGATTGTAAACGAATGTAAAGGCCTTCCCTTGGCTCTGAAAGTGATTGGAGCTGCACTTAGAGGGCAATCTGAGTTAT ACTGGGCGAGTGCGAAGAAGAGGCTGTCTAGAGGTGAATCAATTTGCGAGTTACACGAGAACAAGTTGCTTGAAAGGATGGCCATCAGTGTTCAGTTTTT GCCTAAGAAGGTCAGAGAATGTTTCTTGGATTTGGGATCATTCCCCGAGGATAACAAAATTCCGCTTGATGTACTCATCAATATGTGGGTTGAGATCCAT GATGTTGATGAGGAAGAAGCCTTTGCTATCCTTGTTGAGCTTGCTGACAAGAATCTCCTCACCCTCATCCAGGATTCAAGGGCTGGAGATCTATATAGCA GCTACCATGACATATCGGTCACTCAACATGATGTGCTGCGTGACCTTGCAATCCATATGACTAATCGTGGTGACATTAATGAGAGAAAGCAAATGATCAT GCCGAGAAGGGAAGCCGAACTTCCAAGAGAATGGGAAAGAAATGCAGACAAGCCATTCAATGCTCAGATTGTTTCAGTTCATACTGGTGAAATGAATGAA ATGGAGTGGTTTAGCATGGAATTCCCCAAGGCTGAAAGCCTCAGCATTACAAACTGCCACAACTTGAGGCAGCTTCCTGCTGATCTGGGGAAGGTGAAAT CTCTACACATTCTACGGCTGTACGCATGTCCGAGCCTGAAGCTTGTGCCGCGCTCCATCTGCGAGCTTTCGGAGTTGAAGTACCTAGACATTTCTCAATG TGTGAACTTGAGATCCCTTCCAGATGGAATCGGGAAGATGTCGAGATTGGAGAAGATAGACATGAGAGAATGCTCGCAGGTGTACAGCGTCCTGGAGTCG GCAGCGTTACTGGACTGTTTAAGAAGTGTAGTGTGTGACGAGGAGGTTTCGTGGAGCTGGAAGAGCTTAGAAAAGATGGGTCTCCATGTTCAGGTGGCAG AGAAACATTTCGACCTGGACTGGCTCCTTGAATAG
AA sequence Show only first row Show all	>Lus10032759 pacid=23159027 polypeptide=Lus10032759 locus=Lus10032759.g ID=Lus10032759.BGIv1.0 annot-version=v1.0 MPVTEFFAGEIATELLKTLFTISRRACLCKSTADSLISSINDLLPVIQEIKYSGVELPAFRQFQLDGLSETLRNGLELAGKALGCSRWNVYKMLHLARRM EKLDKRISVFLKGPIQAHVLADVHHLRFDSVERFDRLDGSQRRLEERLESMKIGVSGGGWLEEAVKRVDMECRDDQGKFHFKNRILFLTVSQSPDVEQLR AKIRGFIAEGDDINFGCNDGFSEAGLEDRRRILIVLDDVWSLSVLEQLIFRVHGCKTLVVSRFKFPNVLKATYEVELLKGDEAISLFFQSAFEQCSIPPG TDASLVKQIVNECKGLPLALKVIGAALRGQSELYWASAKKRLSRGESICELHENKLLERMAISVQFLPKKVRECFLDLGSFPEDNKIPLDVLINMWVEIH DVDEEEAFAILVELADKNLLTLIQDSRAGDLYSSYHDISVTQHDVLRDLAIHMTNRGDINERKQMIMPRREAELPREWERNADKPFNAQIVSVHTGEMNE MEWFSMEFPKAESLSITNCHNLRQLPADLGKVKSLHILRLYACPSLKLVPRSICELSELKYLDISQCVNLRSLPDGIGKMSRLEKIDMRECSQVYSVLES AALLDCLRSVVCDEEVSWSWKSLEKMGLHVQVAEKHFDLDWLLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33560		ADR1	ACTIVATED DISEASE RESISTANCE 1...		Lus10032759 [exp]	0	1
AT2G46150			Late embryogenesis abundant (L...		Lus10036403 [exp]	1.4	0.8379
AT5G67220			FMN-linked oxidoreductases sup...		Lus10041598 [exp]	2.2	0.7821
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10036899 [exp]	2.4	0.7938
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032971 [exp]	7.1	0.7849
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013069 [exp]	7.2	0.7602
AT3G22530			unknown protein		Lus10035239 [exp]	9.6	0.7473
AT5G18130			unknown protein		Lus10020284 [exp]	10.6	0.7772
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003394 [exp]	11.0	0.7464
AT3G26470			Powdery mildew resistance prot...		Lus10021768 [exp]	11.2	0.7275
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013495 [exp]	13.6	0.7259

Compare expression of checked genes

Lus10032759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.