Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23290 180 / 4e-55 MYB ATMYB70 myb domain protein 70 (.1) AT4G37260 179 / 7e-55 MYB ATMYB73 myb domain protein 73 (.1) AT3G50060 178 / 1e-54 MYB ATMYB77 myb domain protein 77 (.1) AT5G67300 176 / 1e-53 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT3G55730 162 / 2e-47 MYB ATMYB109 myb domain protein 109 (.1) AT3G09230 159 / 2e-46 MYB ATMYB1 myb domain protein 1 (.1) AT2G39880 155 / 6e-45 MYB ATMYB25 myb domain protein 25 (.1) AT4G33450 126 / 4e-35 MYB ATMYB69 myb domain protein 69 (.1) AT5G17800 127 / 1e-34 MYB ATMYB56 myb domain protein 56 (.1) AT1G17950 124 / 4e-34 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021762 [exp] 366 / 8e-129 AT2G23290 179 / 8e-55 myb domain protein 70 (.1) Lus10010238 [exp] 180 / 3e-55 AT4G37260 271 / 4e-90 myb domain protein 73 (.1) Lus10010260 [exp] 179 / 2e-54 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) Lus10010055 [exp] 177 / 3e-54 AT4G37260 259 / 2e-85 myb domain protein 73 (.1) Lus10014103 [exp] 176 / 3e-54 AT4G37260 213 / 2e-68 myb domain protein 73 (.1) Lus10030336 [exp] 177 / 3e-53 AT4G37260 290 / 1e-96 myb domain protein 73 (.1) Lus10040940 [exp] 171 / 1e-52 AT4G37260 176 / 2e-54 myb domain protein 73 (.1) Lus10007503 [exp] 169 / 8e-52 AT4G37260 182 / 2e-56 myb domain protein 73 (.1) Lus10028979 [exp] 165 / 4e-50 AT4G37260 181 / 1e-55 myb domain protein 73 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G035100 [exp] 229 / 5e-75 AT4G37260 183 / 1e-56 myb domain protein 73 (.1) Potri.002G128900 [exp] 221 / 4e-72 AT4G37260 179 / 2e-55 myb domain protein 73 (.1) Potri.014G022500 [exp] 182 / 3e-56 AT4G37260 226 / 3e-72 myb domain protein 73 (.1) Potri.002G122600 [exp] 182 / 4e-56 AT4G37260 258 / 6e-85 myb domain protein 73 (.1) Potri.007G048900 [exp] 181 / 2e-55 AT4G37260 273 / 2e-90 myb domain protein 73 (.1) Potri.005G142600 [exp] 180 / 1e-54 AT4G37260 246 / 7e-80 myb domain protein 73 (.1) Potri.009G096000 [exp] 170 / 3e-52 AT4G37260 222 / 1e-71 myb domain protein 73 (.1) Potri.008G070900 [exp] 170 / 8e-52 AT4G37260 173 / 2e-52 myb domain protein 73 (.1) Potri.001G300200 [exp] 163 / 2e-49 AT4G37260 203 / 1e-64 myb domain protein 73 (.1) Potri.008G062700 [exp] 162 / 3e-47 AT3G55730 290 / 7e-95 myb domain protein 109 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10032764 pacid=23158974 polypeptide=Lus10032764 locus=Lus10032764.g ID=Lus10032764.BGIv1.0 annot-version=v1.0 ATGGACCCAATGCTGCACAACAACAACATGTGCTCTACCTCTTCTACCACCTCGGATTCTTCCTCCTCCGATTCCGCCGCCACCGGTTCAGCCAAGCGCA CCGACCGGATCAAGGGCCCATGGAGCGCAGAGGAGGACCGGGTGCTCACCCGCCTTGTCGAGCGCCACGGCCCGAGGAACTGGTCCTTGATTAGCCGCTA CATCAACGGCCGCTCCGGGAAGTCATGTCGGCTGCGTTGGTGTAATCAGCTCTGCCCCACCGTACAGCACCGCCCTTTCTCCGCCTCTGAGGACCACACC ATCCTTGCTGCCCACGCTCGTTACGGTAACCGCTGGGCAACTATAGCTCGCCTTCTCCCTGGTCGGACCGACAATGCTGTCAAGAACCACTGGAACTCCA CTCTCAAGCGCCGCGCCTTTTCCGGACACGGACAAACCTCCTCCTCATCGCCGCCTCAGGCGGCGGTGTTTCATCAGCGGGCGGCGTCCGACGGGAACTA TAGTACTCAAGAGTACTGTTGGAATTACGGTGAGGGGTGTTTGTCGCCAGCGACGCCAGCGGCAGTGGTGGAGGTGGATACGGAGGAAACTCTGACGACG CTGACTCTTGCCCCGCCGGGGATGGGAAGCGGTGGAGGTGGACAAGGGATGAGTAATGTGGCGGAGGAGAAGAGGGCGGACAGTATGCCAGCTGGATTTT GGGACGTTATGAGAGGCGTCATTGCTAAAGAAGTTAGAGAGTATGTGAATTCTACCATGTCGTCGGAGAGCCCCACACCTACCGCCGCAGCCAGTTATTT CCATTAA
AA sequence Show only first row Show all	>Lus10032764 pacid=23158974 polypeptide=Lus10032764 locus=Lus10032764.g ID=Lus10032764.BGIv1.0 annot-version=v1.0 MDPMLHNNNMCSTSSTTSDSSSSDSAATGSAKRTDRIKGPWSAEEDRVLTRLVERHGPRNWSLISRYINGRSGKSCRLRWCNQLCPTVQHRPFSASEDHT ILAAHARYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAFSGHGQTSSSSPPQAAVFHQRAASDGNYSTQEYCWNYGEGCLSPATPAAVVEVDTEETLTT LTLAPPGMGSGGGGQGMSNVAEEKRADSMPAGFWDVMRGVIAKEVREYVNSTMSSESPTPTAAASYFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10032764 [exp]	0	1
AT2G39650			Protein of unknown function (D...		Lus10040293 [exp]	2.4	0.8227
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10001557 [exp]	2.8	0.7606
AT2G40920			F-box and associated interacti...		Lus10001579 [exp]	3.9	0.7518
AT1G21010			unknown protein		Lus10035664 [exp]	7.2	0.7954
AT4G17940			Tetratricopeptide repeat (TPR)...		Lus10022877 [exp]	12.0	0.7534
AT2G26530		AR781	Protein of unknown function (D...		Lus10006479 [exp]	12.8	0.7823
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019448 [exp]	15.3	0.7724
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10007921 [exp]	15.9	0.7576
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	18.1	0.7767
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036519 [exp]	21.4	0.7449

Compare expression of checked genes

Lus10032764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.