Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G29000 238 / 2e-74 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT4G28610 217 / 2e-66 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT3G04450 216 / 2e-65 GARP Homeodomain-like superfamily protein (.1.2) AT2G20400 178 / 1e-51 GARP myb-like HTH transcriptional regulator family protein (.1) AT2G01060 161 / 3e-46 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G06800 162 / 8e-46 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G13040 158 / 1e-43 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT4G13640 130 / 2e-34 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G04030 130 / 1e-33 GARP Homeodomain-like superfamily protein (.1.2.3) AT1G69580 128 / 2e-33 GARP Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029607 [exp] 654 / 0 AT5G29000 279 / 2e-89 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10008197 [exp] 362 / 3e-122 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10024938 [exp] 255 / 2e-80 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10022886 [exp] 253 / 2e-79 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10022885 [exp] 247 / 4e-77 AT4G28610 299 / 2e-97 phosphate starvation response 1 (.1) Lus10035705 [exp] 165 / 8e-46 AT3G13040 372 / 4e-125 myb-like HTH transcriptional regulator family protein (.1.2) Lus10037296 [exp] 160 / 3e-44 AT3G13040 364 / 5e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10039124 [exp] 152 / 9e-43 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10023816 [exp] 150 / 4e-41 AT5G06800 224 / 2e-70 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048000 [exp] 298 / 4e-97 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.019G020900 [exp] 286 / 1e-92 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.002G257800 [exp] 252 / 2e-78 AT4G28610 332 / 6e-110 phosphate starvation response 1 (.1) Potri.006G191000 [exp] 176 / 2e-50 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.007G003200 [exp] 174 / 4e-49 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G047900 [exp] 166 / 3e-47 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2) Potri.014G000700 [exp] 164 / 4e-46 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 159 / 4e-45 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 154 / 1e-43 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G101000 [exp] 139 / 3e-38 AT2G01060 179 / 2e-55 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10032778 pacid=23158967 polypeptide=Lus10032778 locus=Lus10032778.g ID=Lus10032778.BGIv1.0 annot-version=v1.0 ATGTCATCATCTTTCCGAGTTCTTCACACTCCTCCCGAAGACAAGTACCCGAAACTGCTTGATACTTTTCAGACGAGGGAGCTAATGAGAAACCCTATAC CTGAACTGGCAGTTCCAGTGGGTGGTTCCACCTCTACTGGGGCTGTTGACTATTTGCTCTCCTCGTCTCCGATTTCGCCACATTATCGGGGTTCTCAGTT AACTTCTGAGTCATCAAGTGGGGGGGGAAGCTTGCCTACATCATTGCTTGCTCCACATCCAGAAGTGCTGCAATCCACACCGTTTCCTGTTGACTCTGAA GAGAATAAGAGTAGTGGTGGTTGGTCTATCAATCCACTTGCAGATTTTCTTGATCTTCCGGAGAATGTTGCGTCTGACAAAAATGTCAAGAAAACAGATT GGCAGTGGGCAGATCAATGGATCTCAGTCAATGATAACTTAGACGCAGACTGGAATGAAATTCTTAGTGAAGTTAATGATGCCACCGAGACAAACCTAAA GGTGCCACCACCACCGTCTTCCACTAACTTGCTGCCACAACCCTCAGTACAACAAGCACAAGTAAATCCTCAGCAGCAACCTGCACTTAGCGGAGAATTA AATGTTGCCGCAACCCCACTGTCCTCAGCACCAGCAAACAAAGGCAGGATGCGATGGACACCAGAACTTCACGAGGCTTTTGTGGAAGCTGCCAATCAGC TTGGTGGCAGCGAAAGAGCTACTCCGAAGGGTGTCTTGAAGCTAATGAAAGTTGAAGGCTTGACGATTTATAATGTCAAAAGCCACTTGCAGAAGTACAG AACAGCCAGGTATAAACCAGAGCCATCTGAAGGATCTTCTGAGAAAAATTTGGGCTCCATTAATGAAATGAAATCTCTGGACTTCAAAACAAGCATCGGG ATAACGGAAGCTTTAAGATTGCAAATGGAAGTTCAGAAGCGACTACATGAACAGCTTGAGATTCAGCGAAACTTACAGTTACGAATCGAAGAACAAGGAA GGTGCCTGCAGATGATGTTTGAGAAGCAAACGAAGATGGAAGAGGAAAAGACTAAGCTTCCTTCTTCGTCTTCCTCTGTGGACGATAAATTAGGACCCTC CGATGTCGAGGGAACGAATACTCCAGGAGATAAGACTAGCGATTCCGGTAAGGCAAGCTCCCATGAAGCAGACAAGAAACAGAAATTAACAGGAGGTGGA AACAGCAAGGATACAGCATGCGTAAGAGATGACACTGCGTTGAGCCAATCGCAGGGGAAACGACCAAGGACAGATTAA
AA sequence Show only first row Show all	>Lus10032778 pacid=23158967 polypeptide=Lus10032778 locus=Lus10032778.g ID=Lus10032778.BGIv1.0 annot-version=v1.0 MSSSFRVLHTPPEDKYPKLLDTFQTRELMRNPIPELAVPVGGSTSTGAVDYLLSSSPISPHYRGSQLTSESSSGGGSLPTSLLAPHPEVLQSTPFPVDSE ENKSSGGWSINPLADFLDLPENVASDKNVKKTDWQWADQWISVNDNLDADWNEILSEVNDATETNLKVPPPPSSTNLLPQPSVQQAQVNPQQQPALSGEL NVAATPLSSAPANKGRMRWTPELHEAFVEAANQLGGSERATPKGVLKLMKVEGLTIYNVKSHLQKYRTARYKPEPSEGSSEKNLGSINEMKSLDFKTSIG ITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRCLQMMFEKQTKMEEEKTKLPSSSSSVDDKLGPSDVEGTNTPGDKTSDSGKASSHEADKKQKLTGGG NSKDTACVRDDTALSQSQGKRPRTD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10032778 [exp]	0	1
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	1.0	0.8889
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10017518 [exp]	2.0	0.8305
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10029471 [exp]	2.4	0.8225
					Lus10008068 [exp]	3.3	0.8046
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10015664 [exp]	4.2	0.8388
AT5G22120			unknown protein		Lus10004788 [exp]	6.2	0.8028
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10037678 [exp]	7.1	0.8118
AT2G20210			RNI-like superfamily protein (...		Lus10011909 [exp]	8.9	0.8535
					Lus10039517 [exp]	9.2	0.7788
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10032761 [exp]	10.0	0.7851

Compare expression of checked genes

Lus10032778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.