Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55580 291 / 1e-94 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT5G41920 194 / 2e-57 GRAS GRAS family transcription factor (.1) AT5G66770 194 / 6e-56 GRAS GRAS family transcription factor (.1) AT3G54220 194 / 2e-55 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT1G63100 174 / 3e-48 GRAS GRAS family transcription factor (.1) AT3G50650 171 / 2e-47 GRAS SCL7 GRAS family transcription factor (.1) AT3G03450 164 / 4e-45 GRAS RGL2 RGA-like 2 (.1) AT5G17490 158 / 5e-43 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G66350 154 / 8e-42 GRAS RGL1 RGA-like 1 (.1) AT4G37650 147 / 5e-39 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027123 [exp] 705 / 0 AT1G55580 298 / 5e-97 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Lus10041540 [exp] 213 / 6e-62 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 211 / 4e-61 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10006322 [exp] 194 / 4e-56 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10029592 [exp] 187 / 9e-53 AT1G63100 669 / 0.0 GRAS family transcription factor (.1) Lus10041740 [exp] 186 / 1e-52 AT5G66770 631 / 0.0 GRAS family transcription factor (.1) Lus10024014 [exp] 184 / 7e-52 AT5G66770 590 / 0.0 GRAS family transcription factor (.1) Lus10003540 [exp] 176 / 1e-49 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10033912 [exp] 174 / 1e-48 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G020200 [exp] 387 / 5e-132 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.015G008300 [exp] 370 / 2e-125 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.001G473200 [exp] 364 / 6e-123 AT1G55580 405 / 4e-139 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.001G326000 [exp] 206 / 1e-59 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.006G114200 [exp] 199 / 2e-56 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.016G143833 [exp] 196 / 3e-55 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.002G036100 [exp] 187 / 9e-54 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.003G122400 [exp] 182 / 4e-51 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.007G026300 [exp] 180 / 1e-50 AT5G66770 589 / 0.0 GRAS family transcription factor (.1) Potri.005G226800 [exp] 179 / 1e-50 AT3G54220 424 / 3e-142 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10032882 pacid=23160442 polypeptide=Lus10032882 locus=Lus10032882.g ID=Lus10032882.BGIv1.0 annot-version=v1.0 ATGCCACCCCAGATAGTTGATCATTGGCCGTTCACCATCACTGCCATCGCCATCCGCCGCCTTAGATCCCCCCCCCCCCCGCCTCTACCACTGCTCCCCC CGCCTTTCCCTCCTCCTCCTCCTGGACCGTCGTCGTCGTCAAGTTCATTCGTATCGTCAGCGATCCAAGTGAGGCAGCTAATAGTAAGATGCTCCGACCT CATTTCCCAAGCGGATTACTCCTCCGCCCACCGCCTCATCGGCATCCTCTCCGCCGCCTCCTCCCCTTACGGAGACTCCACCCAACGCCTCGCCCACCAC TTCTCCTCCGCCCTCTCCCTCCGCCTATCAGGACACCTCCCCATCGCCGTCGTCGATCACCGCGAAGTCGCGTCCGCCTACTTGACGTTGAACCAAATAA CGCCGTTCATAAGGTTCACCCACCTCACCGCCAACCAAGCCATCTTGGAATCCGTACTACTAGGGCAACAACAACCTGACGATCAAGGGACGATCCACAT CGTTGATTTCGACATAATGCACGGCGTCCAATGGCCGCCGTTGATGCAAGCACTCGCCGAGCGCCACCCTCCCCCGAGTCTCCGGATCACCGGAACTGGA CACGACCCCGAAACCCTAACCCGAACCGGCGACCGCCTCTCCAAGTTTGCCCAATCCTTAGGGCTAACATTCCAGTTCCACCCGCTTCTCCTCCTCCACG CCTCCGCCGACCATCTCATACCATCGGCAGTGACGGTCCTCCCTGGAGAAACCCTAGCAGTGAACTGCATGTTCTACCTACACAGACTAATCAACGACTT CCAAAACGACGACTACATGATAAGAACATTCTTGAGGAGGATTAGGGAGATGAATCCGAGGGTGGTGACGATCGGAGAGAGGGAAATGGACAGCGTCGGA AGCGGCGGCGGCATCGGCGAGGCGGTGGAGTATTACCAGAGGGTGCTTGAGTCGTTGGAAGAAACGGTGGCCCCCACCAGTGCTGACAGGGCGGAGGTGG AAGGAGTGTGGTTTAGTAAGGAGATCAAAGAAGTGGTCAACGGCGGGAGGGTTGACCACAAGTTGAGGTGGTGGAGTGAGATGATGACAAGTGTCGGGTT TCGGAACGTCGGATTGAGTCCGTTCGCCGTTTCTCAGGCGAAGCTGCTGTTGAGGCTTCATTACCCTTCTGAAGGTTACCGTCTTGATCACGAAGATGAC GATGACGGCGTCGTTTCGGGGTTGTTCTTGGGCTGGAGAGATCGGCCGCTCTTCTCATTGTCCTCCTGGCATGCTTGA
AA sequence Show only first row Show all	>Lus10032882 pacid=23160442 polypeptide=Lus10032882 locus=Lus10032882.g ID=Lus10032882.BGIv1.0 annot-version=v1.0 MPPQIVDHWPFTITAIAIRRLRSPPPPPLPLLPPPFPPPPPGPSSSSSSFVSSAIQVRQLIVRCSDLISQADYSSAHRLIGILSAASSPYGDSTQRLAHH FSSALSLRLSGHLPIAVVDHREVASAYLTLNQITPFIRFTHLTANQAILESVLLGQQQPDDQGTIHIVDFDIMHGVQWPPLMQALAERHPPPSLRITGTG HDPETLTRTGDRLSKFAQSLGLTFQFHPLLLLHASADHLIPSAVTVLPGETLAVNCMFYLHRLINDFQNDDYMIRTFLRRIREMNPRVVTIGEREMDSVG SGGGIGEAVEYYQRVLESLEETVAPTSADRAEVEGVWFSKEIKEVVNGGRVDHKLRWWSEMMTSVGFRNVGLSPFAVSQAKLLLRLHYPSEGYRLDHEDD DDGVVSGLFLGWRDRPLFSLSSWHA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10032882 [exp]	0	1
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10026589 [exp]	1.0	0.9903
					Lus10021217 [exp]	4.7	0.9890
AT5G01150			Protein of unknown function (D...		Lus10003168 [exp]	6.7	0.9885
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	8.0	0.9876
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10013205 [exp]	8.9	0.9873
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10041909 [exp]	10.1	0.9843
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10036953 [exp]	11.6	0.9796
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Lus10006384 [exp]	12.4	0.9297
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10013874 [exp]	14.9	0.9803
					Lus10026293 [exp]	16.4	0.9818

Compare expression of checked genes

Lus10032882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.