Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38080 872 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G01190 824 / 0 LAC10 laccase 10 (.1) AT5G58910 750 / 0 LAC16 laccase 16 (.1) AT5G03260 718 / 0 LAC11 laccase 11 (.1) AT5G60020 658 / 0 LAC17, ATLAC17 laccase 17 (.1) AT2G29130 627 / 0 LAC2, ATLAC2 laccase 2 (.1) AT5G05390 575 / 0 LAC12 laccase 12 (.1) AT2G30210 568 / 0 LAC3 laccase 3 (.1) AT1G18140 558 / 0 LAC1, ATLAC1 laccase 1 (.1) AT2G40370 553 / 0 LAC5 laccase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035517 [exp] 970 / 0 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10017175 [exp] 959 / 0 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 924 / 0 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10041481 [exp] 902 / 0 AT2G38080 807 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10034289 [exp] 880 / 0 AT2G38080 795 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10040697 [exp] 834 / 0 AT2G38080 828 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10018208 [exp] 826 / 0 AT2G38080 837 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10028263 [exp] 762 / 0 AT2G38080 775 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10023189 [exp] 717 / 0 AT5G03260 930 / 0.0 laccase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G112000 [exp] 974 / 0 AT2G38080 911 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.016G112100 [exp] 968 / 0 AT2G38080 891 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097000 [exp] 967 / 0 AT2G38080 914 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G096900 [exp] 966 / 0 AT2G38080 899 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097100 [exp] 966 / 0 AT2G38080 896 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.001G248700 [exp] 889 / 0 AT2G38080 874 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.009G042500 [exp] 889 / 0 AT2G38080 891 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.010G193100 [exp] 786 / 0 AT2G38080 771 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.008G064000 [exp] 781 / 0 AT2G38080 728 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.009G102700 [exp] 724 / 0 AT5G03260 881 / 0.0 laccase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10032894 pacid=23160339 polypeptide=Lus10032894 locus=Lus10032894.g ID=Lus10032894.BGIv1.0 annot-version=v1.0 ATGGCTTATTCCTGCCTTCGATTCCTCGTCTTTGCAGTCTGCTTCCTTCCCGCTTTTGTGGACTGTGCTGTTCGTCGTTACAACTTCAATGTTGTTATGA AAAACACTACAAGGCTGTGTTCGAGCAAGCCGATCGTTACGGTGAATGGCAGATTTCCAGGACCAACTCTCTACGCTAGGGAAGATGATACAGTGCTAGT AAATGTTGTCAATCATGTCAAGTACAATGTGTCCATTCACTGGCATGGAATTCGGCAGATCAGGACTGGTTGGGCTGATGGACCAGCATACATCACACAA TGCCCCATCCAGCCAGGGCAGAACTACCTGTACAACTTCACCATTACAGGCCAAAGAGGGACTCTTCTATGGCACGCCCATATCCTCTGGCTAAGGGCCA CTGTCCATGGCGGTATTGTCATCTTGCCGAAACGAGGCGTTCCTTACCCGTTTCCAGCTCCCCACAAGGAAGTGGTAGTCGTATTAGGTGAATGGTGGAA ATCTGATACAGAAGCTGTGATCAATGAAGCCATGAAGTCTGGATTGGCACCAAACGTCTCTGATGCTCACATAATCAACGGTCATCCCGGTCCAGTTTCC AATTGTGCCTCCCAGGGTGGCTTCACATTGCCAGTACAGGCAGGCAATACGTACATGCTAAGATTAATCAACGCTGCACTCAATGAAGAGCTCTTCTTCA AAATCGCCGGACACAAACTCACAGTAGTAGAAGTGGATGCCACCTACGTTAAACCATTCAAAACCGACGTAGTCCTAATCGCACCAGGACAAACAACCAA CGTCCTAGTTTCAGCAGATCAAAATTCAGGCAACTACCTGGTTGCCGCCTCCCCGTTCATGGACTCTCCGATCGCCGTCGATAACAGGACAGCCACCGCC ACTGTCAGCTACGCCGGCACGCTCTCCACCTCCCCGACGACTCAGACAACCCCGCCTCCCCAGAACGCCACCGCAATTGCCAACAAGTTCACAAACTCTC TAAAAAGTCTTAACTCCAAGAATTTCCCTGCTGCAGTCCCCAAATCAATCGACCAAACACTGTTCTTCACCGTGGGGCTAGGGATCAACCCTTGCAAGAG CTGCAAAGCCGGTAACGGCAGCAGAATCGTCGCGAGTGTTAACAACGTGAGCTTTGTGATGCCGACCACTGCCCTTCTTCAGGCGCATTTCTTCAAACAG AGCGGCGTCTTCACCACCGATTTCCCGGCAAACCCGCCCACCGCTTTCAACTACACGGGGAGTACCCAGCCAGCGAATCTGGCGACGACGCTCGGGACGA AGGTGTACCGATTAGCTTACAACTTGACGGTTGAGCTGGTGATGCAGGACACCGGGATTATATCGCCAGAGAATCATCCAGTGCATCTCCACGGATTTAA TTTCTTCGCCGTCGGGAGGGGGAATGGGAACTATAACCCTAAAACGGATCCCAAGAACTTCAACCTTGTGGATCCAGTGGAGAGGAATACGATTGGAGTT CCTTCCGGCGGGTGGGTGGCAATCCGGTTCCGGGCAGACAACCCCGGAGTTTGGTTTATGCATTGTCACTTGGAAATCCATACCACTTGGGGATTGAAGA TGGCGTTTTTGGTTGACAACGGGAAAGGACCTAATCAATCGCTTCCGCCTCCTCCCTCCGGTCTTCCCAAATGCTGA
AA sequence Show only first row Show all	>Lus10032894 pacid=23160339 polypeptide=Lus10032894 locus=Lus10032894.g ID=Lus10032894.BGIv1.0 annot-version=v1.0 MAYSCLRFLVFAVCFLPAFVDCAVRRYNFNVVMKNTTRLCSSKPIVTVNGRFPGPTLYAREDDTVLVNVVNHVKYNVSIHWHGIRQIRTGWADGPAYITQ CPIQPGQNYLYNFTITGQRGTLLWHAHILWLRATVHGGIVILPKRGVPYPFPAPHKEVVVVLGEWWKSDTEAVINEAMKSGLAPNVSDAHIINGHPGPVS NCASQGGFTLPVQAGNTYMLRLINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDVVLIAPGQTTNVLVSADQNSGNYLVAASPFMDSPIAVDNRTATA TVSYAGTLSTSPTTQTTPPPQNATAIANKFTNSLKSLNSKNFPAAVPKSIDQTLFFTVGLGINPCKSCKAGNGSRIVASVNNVSFVMPTTALLQAHFFKQ SGVFTTDFPANPPTAFNYTGSTQPANLATTLGTKVYRLAYNLTVELVMQDTGIISPENHPVHLHGFNFFAVGRGNGNYNPKTDPKNFNLVDPVERNTIGV PSGGWVAIRFRADNPGVWFMHCHLEIHTTWGLKMAFLVDNGKGPNQSLPPPPSGLPKC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	0	1
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10041481 [exp]	2.2	0.9604
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001707 [exp]	4.5	0.9515
					Lus10026494 [exp]	4.6	0.9456
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10028141 [exp]	5.7	0.9169
AT5G07475			Cupredoxin superfamily protein...		Lus10012165 [exp]	7.2	0.8432
AT5G40630			Ubiquitin-like superfamily pro...		Lus10032107 [exp]	8.1	0.9257
AT1G72230			Cupredoxin superfamily protein...		Lus10020944 [exp]	8.1	0.9018
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	8.2	0.9147
AT2G31110		TBL40	TRICHOME BIREFRINGENCE-LIKE 40...		Lus10000466 [exp]	8.5	0.9368
AT1G51640		ATEXO70G2	exocyst subunit exo70 family p...		Lus10035750 [exp]	9.2	0.9046

Compare expression of checked genes

Lus10032894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.