Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15310 298 / 2e-99 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G01140 297 / 4e-98 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT3G61250 243 / 3e-78 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT3G02940 236 / 2e-75 MYB ATMYB107 myb domain protein 107 (.1) AT1G34670 238 / 3e-75 MYB ATMYB93 myb domain protein 93 (.1) AT4G21440 231 / 4e-73 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G16770 229 / 3e-72 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G05100 228 / 3e-72 MYB ATMYB74 myb domain protein 74 (.1) AT5G10280 224 / 3e-70 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT4G28110 222 / 3e-70 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015376 [exp] 390 / 5e-135 AT5G15310 266 / 9e-88 myb domain protein 16 (.1.2) Lus10026620 [exp] 286 / 3e-95 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10015712 [exp] 253 / 8e-82 AT3G01140 269 / 5e-88 NOECK, myb domain protein 106 (.1) Lus10019086 [exp] 249 / 3e-80 AT3G01140 272 / 1e-89 NOECK, myb domain protein 106 (.1) Lus10030378 [exp] 239 / 2e-76 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10014784 [exp] 234 / 9e-75 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10041142 [exp] 231 / 4e-73 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 230 / 4e-73 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10039743 [exp] 223 / 4e-71 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G086300 [exp] 313 / 3e-104 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.010G165700 [exp] 306 / 7e-102 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1) Potri.008G089700 [exp] 299 / 7e-99 AT5G15310 291 / 1e-96 myb domain protein 16 (.1.2) Potri.008G089200 [exp] 297 / 3e-98 AT3G01140 289 / 4e-95 NOECK, myb domain protein 106 (.1) Potri.002G157600 [exp] 240 / 5e-77 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.005G074500 [exp] 239 / 3e-76 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.004G033100 [exp] 238 / 2e-75 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.014G081200 [exp] 236 / 3e-75 AT3G61250 352 / 6e-122 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.007G093900 [exp] 236 / 4e-75 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G164900 [exp] 234 / 3e-74 AT1G34670 309 / 7e-104 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033003 pacid=23160444 polypeptide=Lus10033003 locus=Lus10033003.g ID=Lus10033003.BGIv1.0 annot-version=v1.0 ATGGGAAGATCACCATGCTGTGACAAAGTTGGGTTGAAGAAAGGACCCTGGACTCCGGAGGAAGACCAGAAGCTCCTTGCTTACATTGAAGAGAACGGCC ATGGCAGCTGGCGTGCCTTACCTTCTAAAGCTGGTCTGCAGAGGTGCGGGAAGAGCTGTAGGCTGAGATGGACAAACTATCTAAGGCCAGATATCAAGAG AGGCAAATTCAGTTTGCAGGAAGAACAAACCATTATCCAACTTCATGCCCTCTTGGGTAACAGGTGGTCGGCAATTGCAACACACTTACCAAAGAGGACT GATAACGAAATCAAAAATTATTGGAATACCCACCTCAAGAAGCGGCTGTCCAAGATGGGGATCGATCCAGTTACCCACAAACCCAAGAAGGACACTATGA GCAACACCACCCAATCAGGAGGAGGAGGAGCTGGCTCTGTCATGATCAACAACAAGACCGCTGCTAACTTAAGCCACATGGCTCAGTGGGAGAGCGCCCG CCTCGAAGCCGAAGCTCGTCTGGTCCGCCAATCCAAGCTCCTCTCACTCCATTCCTTCTCAGCCGCCTCCACCTCAGCGTCACCATCAATGATCGTCAAG GCCGAACCACCTCCTCCTCCTCCTCCTCCCCCTCATCATCATGAGCATGACTGGACAGACCAGCTGGCCATTTCCTGCTGCAGCTCCATGGAAGGTACAG GTGGTGGTGGTGGTGGTCCATGGAGTCCCGATAATGAAAACGACAATCATCATCATGATGACAGCAGTTATGATAAGGACAATATTATTAATAATAATAG TACTACTCATGATGATCATGATGATAGTGTGGGCGAGGAAGGTTTCATTAACCTACTTCTATCAGCTGATCATCACCAGGAGGACACTGATGATAATAAC ATTAACAATAATGGAAGCGGCTGCATTAATTATGCAAATGCGGCAGAGGAGGAAGAGGAGATGAAGCAGCAGGATTCGACGTTGACGACGGACAATAACA GTACTGGGAGGAGCACTAGTACGAGTGGTGGTGACCGTGATTGCTGCTATGAAGAGGAAGACATTAACAACAAGAATTACTGGAATACCATTCTCAATTT GGTTGACACCACCTCTCCTAATTCACCTCATGATCATCATACTCCCATCTTCTAG
AA sequence Show only first row Show all	>Lus10033003 pacid=23160444 polypeptide=Lus10033003 locus=Lus10033003.g ID=Lus10033003.BGIv1.0 annot-version=v1.0 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEENGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRT DNEIKNYWNTHLKKRLSKMGIDPVTHKPKKDTMSNTTQSGGGGAGSVMINNKTAANLSHMAQWESARLEAEARLVRQSKLLSLHSFSAASTSASPSMIVK AEPPPPPPPPPHHHEHDWTDQLAISCCSSMEGTGGGGGGPWSPDNENDNHHHDDSSYDKDNIINNNSTTHDDHDDSVGEEGFINLLLSADHHQEDTDDNN INNNGSGCINYANAAEEEEEMKQQDSTLTTDNNSTGRSTSTSGGDRDCCYEEEDINNKNYWNTILNLVDTTSPNSPHDHHTPIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10033003 [exp]	0	1
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10015376 [exp]	1.0	0.9637
AT5G62360			Plant invertase/pectin methyle...		Lus10031717 [exp]	1.4	0.9227
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10039667 [exp]	6.0	0.8999
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10004847 [exp]	6.7	0.9035
AT3G06880			Transducin/WD40 repeat-like su...		Lus10038340 [exp]	9.7	0.8979
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10027459 [exp]	11.7	0.8760
AT2G25560			DNAJ heat shock N-terminal dom...		Lus10032540 [exp]	12.4	0.8466
AT5G14510			ARM repeat superfamily protein...		Lus10022275 [exp]	13.9	0.8452
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10041893 [exp]	14.4	0.8630
AT1G19400			Erythronate-4-phosphate dehydr...		Lus10042323 [exp]	14.4	0.8482

Compare expression of checked genes

Lus10033003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.