Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24790 663 / 0 AAA-type ATPase family protein (.1.2) AT2G02480 350 / 1e-104 STI STICHEL, AAA-type ATPase family protein (.1) AT1G14460 334 / 1e-99 AAA-type ATPase family protein (.1) AT5G45720 295 / 1e-86 AAA-type ATPase family protein (.1.2) AT4G18820 295 / 1e-85 AAA-type ATPase family protein (.1) AT1G21690 63 / 3e-10 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G77470 49 / 1e-05 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013665 [exp] 1554 / 0 AT4G24790 702 / 0.0 AAA-type ATPase family protein (.1.2) Lus10042401 [exp] 336 / 2e-99 AT2G02480 1051 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10005422 [exp] 294 / 1e-85 AT4G18820 909 / 0.0 AAA-type ATPase family protein (.1) Lus10015234 [exp] 293 / 2e-85 AT4G18820 934 / 0.0 AAA-type ATPase family protein (.1) Lus10007316 [exp] 286 / 1e-82 AT4G18820 1072 / 0.0 AAA-type ATPase family protein (.1) Lus10029265 [exp] 279 / 4e-80 AT4G18820 1042 / 0.0 AAA-type ATPase family protein (.1) Lus10026270 [exp] 219 / 2e-59 AT2G02480 626 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10025689 [exp] 59 / 7e-09 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10028543 [exp] 57 / 2e-08 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G091700 [exp] 948 / 0 AT4G24790 656 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G088100 [exp] 927 / 0 AT4G24790 664 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G230300 [exp] 367 / 1e-110 AT2G02480 1189 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.003G044900 [exp] 346 / 3e-103 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.004G061700 [exp] 290 / 3e-83 AT4G18820 1031 / 0.0 AAA-type ATPase family protein (.1) Potri.011G071300 [exp] 287 / 2e-82 AT4G18820 1047 / 0.0 AAA-type ATPase family protein (.1) Potri.005G181300 [exp] 61 / 2e-09 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G081200 [exp] 59 / 6e-09 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.011G023800 [exp] 46 / 8e-05 AT1G24290 689 / 0.0 AAA-type ATPase family protein (.1) Potri.002G080100 [exp] 45 / 0.0001 AT1G21690 505 / 1e-180 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0604 [flax] [poplar] post-AAA PF12169 [flax] [poplar] DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10033035 pacid=23177053 polypeptide=Lus10033035 locus=Lus10033035.g ID=Lus10033035.BGIv1.0 annot-version=v1.0 ATGATGGATGGACGGCGGCATTCAGTTGACATTCCCATCTCCAGGACTCTGGTGGCGCTTAGGAGAGTTAGGTCGCTCAGAGACCCATCAACCAATTCCA TGAGCAAATTTTCTGCTGTGCTAGAAAATGTGAACTGGGAAACTAGCATATCTAACGAAGTTTCCATAAGGTTTATGAATGACATTGCAGAAGATTCTTC TTCTCCCATTGGTTTTCCTGGTTTTCATGAGCAACACAAGGAGGATCAAGCCGCATCTGAAAATATGGAAGCACATTCTGGGCATGATAATTTTGACATG AAGCACGAAAAGGACATTCTTGAGAAGCAAACTCTGATTCAAAGGTATGAAAGACAAAGGGAGCTGGAAGACGTGGATTCAGCCATTCAAGGAGAAGGTA GAGAGCAGGGTGCATTAAGAGAGAAAGCCAGGCACAAATGCAACGACATACAGGCATCTTCATTGGTAGGGGATATTTTGAGTCCCAACCTATCTATAAC TGATGCTTTCTCGAGCCGTAGTGCATCATTATATCTTGATGAAGATACTAACTTTGGAATTCAAGGTGAACGTGGTGGATGTGGAATAACATGTTGCTGG ACTAGGACCCCGAGATTGAGAGGTGCAGAAAGCTATCCGTTATTGTCAAGGGATGTAGTAGCTGGAACAAATACAGATACCCCAAGATGTTTGAGTCAGA AGTTCAGGCCAACATCTTTTAACGATTTGGTGGGGCAAAATGTTGTGGTGAGATCTCTTATGGGTGCCATTTCTAGAGGCAGGGTAGCCACTTTCTACCT CTTTCACGGTCCACGTGGCACTGGCAAAACTTCTGCATCAAGGATTTTTGCAGCTGCTGTTAATTGCATCTCGCTTGAGGAGCATAAGCCATGCGGTCTT TGTCGGGAATGTCTCTTGTTTTTCAGTGGAAGGAGCCGGGATGTCCAAGAAGTAGACCCTGTGAGAGTAAACCGAGCTGAACGATTTAGATCTCTTATAA AAAGTGCAGAGGGACAGCCTGTTTCATCACGATTCAAGGTTTTCATTGTTGATGAGTGCCACTTATTGCACGGAGAGACCTGGTCAATGTTCTTGAATAG CCTGGATAACCTCTCTCAACATGTTGTGTTTTTGATGATCACCCCTGATCTGGATAAGTTGCCAAGACTTGCAGTAGCCAGAGCTCAAAGATATCATTTT CAAATGCTGAAAGATTCTGATATTGCAATCAGGCTTAGAGATATATGCATTCAGGAGCGTCTCGACTTTGATCAAGTGGCGTTGGAATTCATTGCTGCCA AATCAAATGGTTCGCTGAGGGATGCAGAAATGATGTTGGATCAACTGAGTTTGCTTGGGAAAAGAATCACGGTGTGCCTGGTTTACGAGCTTATAGGGGT TGTTTCTGACGATGAATTGCTCGATTTGCTGGACTTAGCGCTGTCATCTGACACTTCAAAGACAGTTATAAAGGCCAGGGAGCTTATGAGTTCCAGGATT GATCCTACACAGCTTGTATCACAGTTGGCGAATCTTATCATGGACATTCTCGCCAGTCAATCCCAAGAAGATAGTTCTGAAGCCAGAAAGAGATTTTCCA AGAGTCATGCTTCTGAAGCAGACATGCAGAGATTAAGAAATGCACTAAAAATACTGTCTGAAACTGAGAAACAATTGCGGATGTCAAAAAATCAAAGCAC TTGGCTAACTGTTGCTCTTCTACAATTAAGTTCTCTGGAAACATCATCTATGGATGCAAATGATTCCAAATCATCTTGTAGGAATGCACAAGAAAGAGAT GGGGATTTTTCAAGCACATCATCTGCTGCTGCTGCTGCTGAAAGAGAGAGTCTAAAGCATCTTGTTCCTTGCTCTTGCCAAGATGGTAAGTTGGGTATAG GGAGGAATTGGGAAGCAACATTAGAATCTATATGGGATAGAGCTATACAGTTGTGCCAATCAAATTCACTAAAGAGTTTCCTAAGGAGGCAAGGGAAACT ATCTGCTCTTTCAGTTAATCAAGAGCTAGCTGTTGCTGAATTAGAATTTCATCATCGCCACTCAGTATCCAAAGCCGAAAAGTCGTGGAAGTTGATAGCA AGCCTACTTCAAACAATTTTGGGTTGTAATGTGGAGATCAGGATCAACCTGGTACTCTATGCTCCCATGTCAAGGTGTGCCAGACTGCGGAAGCTTTCTT TCAGCTTGTTTAGTTGCTCTCGCAGAATTCGGGACAAGGCCAAATCACCAGTTAGATATGGAAGTGACACAACAGATTATTCTGATCTCACCTCTGAAAG GCCAATGATTGGAGACAAAGTCGTTTTGCCTTGTTCGTCTAGTTGTCATTCTCAGTTACCACCAGATCACAGGGTGGAACTGGCAAGTGCTTTGAGAAAC AACGATGGGAATGTTCTAACCATCTCATCTCAGAGATCATTACTAGAAAATGCAACAAAACCCCTCATGAGTCTTTGA
AA sequence Show only first row Show all	>Lus10033035 pacid=23177053 polypeptide=Lus10033035 locus=Lus10033035.g ID=Lus10033035.BGIv1.0 annot-version=v1.0 MMDGRRHSVDIPISRTLVALRRVRSLRDPSTNSMSKFSAVLENVNWETSISNEVSIRFMNDIAEDSSSPIGFPGFHEQHKEDQAASENMEAHSGHDNFDM KHEKDILEKQTLIQRYERQRELEDVDSAIQGEGREQGALREKARHKCNDIQASSLVGDILSPNLSITDAFSSRSASLYLDEDTNFGIQGERGGCGITCCW TRTPRLRGAESYPLLSRDVVAGTNTDTPRCLSQKFRPTSFNDLVGQNVVVRSLMGAISRGRVATFYLFHGPRGTGKTSASRIFAAAVNCISLEEHKPCGL CRECLLFFSGRSRDVQEVDPVRVNRAERFRSLIKSAEGQPVSSRFKVFIVDECHLLHGETWSMFLNSLDNLSQHVVFLMITPDLDKLPRLAVARAQRYHF QMLKDSDIAIRLRDICIQERLDFDQVALEFIAAKSNGSLRDAEMMLDQLSLLGKRITVCLVYELIGVVSDDELLDLLDLALSSDTSKTVIKARELMSSRI DPTQLVSQLANLIMDILASQSQEDSSEARKRFSKSHASEADMQRLRNALKILSETEKQLRMSKNQSTWLTVALLQLSSLETSSMDANDSKSSCRNAQERD GDFSSTSSAAAAAERESLKHLVPCSCQDGKLGIGRNWEATLESIWDRAIQLCQSNSLKSFLRRQGKLSALSVNQELAVAELEFHHRHSVSKAEKSWKLIA SLLQTILGCNVEIRINLVLYAPMSRCARLRKLSFSLFSCSRRIRDKAKSPVRYGSDTTDYSDLTSERPMIGDKVVLPCSSSCHSQLPPDHRVELASALRN NDGNVLTISSQRSLLENATKPLMSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24790			AAA-type ATPase family protein...		Lus10033035 [exp]	0	1
AT5G26230		MAKR1	membrane-associated kinase reg...		Lus10041214 [exp]	2.8	0.9140
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10005743 [exp]	3.2	0.9255
AT5G39550		ORTH1, VIM3	VARIANT IN METHYLATION 3, ORTH...		Lus10039127 [exp]	3.7	0.9268
AT4G24790			AAA-type ATPase family protein...		Lus10013665 [exp]	3.9	0.8996
AT1G10385			Vps51/Vps67 family (components...		Lus10024929 [exp]	7.6	0.8780
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10019439 [exp]	8.1	0.9217
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Lus10023442 [exp]	10.2	0.8809
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10032439 [exp]	10.2	0.9224
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10012916 [exp]	10.7	0.9153
AT4G37250			Leucine-rich repeat protein ki...		Lus10019315 [exp]	10.9	0.8565

Compare expression of checked genes

Lus10033035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.