Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19990 702 / 0 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 692 / 0 RPT6A AAA-type ATPase family protein (.1) AT1G53750 307 / 3e-101 RPT1A regulatory particle triple-A 1A (.1) AT2G20140 302 / 3e-99 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 301 / 6e-99 RPT2A regulatory particle AAA-ATPase 2A (.1) AT1G53780 294 / 3e-94 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT5G43010 287 / 5e-94 RPT4A regulatory particle triple-A ATPase 4A (.1) AT1G09100 288 / 6e-94 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT3G05530 287 / 1e-93 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G45000 286 / 2e-93 AAA-type ATPase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017762 [exp] 764 / 0 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10031815 [exp] 308 / 3e-101 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10015524 [exp] 303 / 5e-101 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10031243 [exp] 308 / 4e-100 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1) Lus10011901 [exp] 306 / 7e-99 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 298 / 1e-97 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10019995 [exp] 303 / 1e-94 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10029887 [exp] 285 / 8e-93 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10031492 [exp] 285 / 8e-93 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098300 [exp] 715 / 0 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.008G144100 [exp] 696 / 0 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.001G161700 [exp] 309 / 5e-102 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.006G216600 [exp] 307 / 3e-101 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.018G056600 [exp] 303 / 9e-100 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.014G194700 [exp] 303 / 1e-99 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.002G252600 [exp] 303 / 1e-99 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.013G016800 [exp] 286 / 5e-93 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.005G025100 [exp] 285 / 1e-92 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.005G231700 [exp] 284 / 1e-92 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10033055 pacid=23177048 polypeptide=Lus10033055 locus=Lus10033055.g ID=Lus10033055.BGIv1.0 annot-version=v1.0 ATGGCGACTGCTGCCGTCGAGATGAAGCAACAGGAGTCTTTAATCGGAGATCAGGCCTTTTCGGCCAAGGGTGTGGCCAAGCAGGGCGAAGGGCTGAAGC AATATTATCAACAACACATCCACGAGCTCCAGCTCTTGGTCAGGCAGAAGGGTCACAACCTTAATCGCCTCGAAGCTCAGCGGAATGAGCTCAATTCTAG GGTGAGGATGCTCAGAGAAGAGCTGCAGCTACTCCAGGAACCTGGATCTTATGTTGGTGAGGTTGTCAAAGTTATGGGAAAGAATAAGGTCTTGGTGAAG GTCCATCCAGAGGGAAAGTATGTCGTGGATATTGACAAAAGTATTGACATCACAAAGATCACACCCTCAACAAGGGTGGCCCTTCGTAATGACAGTTATG TTCTTCACCTAGTATTGCCAAGCAAGGTGGATCCATTGGTCAACCTTATGAAAGTTGAAAAAGTTCCAGATTCTACTTATGATATGATTGGTGGGCTTGA TCAACAGATTAAAGAAATTAAGGAGGTCATTGAACTTCCTATTAAACATCCTGAATTGTTTGAGAGCCTTGGAATTGCTCAGCCAAAGGGTGTCCTACTG TATGGCCCTCCCGGAACTGGTAAAACCTTGTTGGCCAGAGCTGTTGCCCACCATACTGACTGCACATTCATTAGGGTCTCTGGTTCTGAATTAGTTCAGA AGGAGCATGCACCTTCCATCATCTTCATGGATGAGATTGACAGCATTGGGTCTGCTCGAATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTGCAGAG AACTATGCTGGAGCTACTCAACCAGCTTGATGGATTTGAGGCATCTAACAAAATCAAGGTCTTGATGGCTACAAATCGTATTGATATCCTTGACCAAGCT TTGCTTCGGCCAGGACGAATTGACAGGAAAATCGAGTTTCCTAATCCTAATGCAGAGTCTCGCTGGGATATCTTGAAAATCCATTCAAGAAGAATGAATT TGATGCGTGGGATTGACTTGAAGAAAATTGCAGAAAAGATGAACGGAGCATCTGGTGCGGAGCTCAAGGCTGTATGCACAGAAGCAGGAATGTTTGCACT GAGGGAGAGAAGGGTGCATGTGACGCAAGAAGATTTTGAGATGGCAGTGGCTAAGGTGATGAAGAAGGACACGGAGAAGAACATGTCGCTGAGGAAGCTA TGGAAGTAA
AA sequence Show only first row Show all	>Lus10033055 pacid=23177048 polypeptide=Lus10033055 locus=Lus10033055.g ID=Lus10033055.BGIv1.0 annot-version=v1.0 MATAAVEMKQQESLIGDQAFSAKGVAKQGEGLKQYYQQHIHELQLLVRQKGHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVK VHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLL YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKEHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA LLRPGRIDRKIEFPNPNAESRWDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKDTEKNMSLRKL WK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10033055 [exp]	0	1
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10003077 [exp]	2.2	0.8807
AT1G01910			P-loop containing nucleoside t...		Lus10036552 [exp]	3.3	0.8534
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10013349 [exp]	6.0	0.8614
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10035934 [exp]	8.8	0.8612
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	9.7	0.8613
AT4G00170			Plant VAMP (vesicle-associated...		Lus10036495 [exp]	9.8	0.8400
AT5G58030			Transport protein particle (TR...		Lus10003350 [exp]	13.0	0.8611
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041015 [exp]	14.5	0.8371
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10014329 [exp]	15.0	0.8609
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	16.2	0.8627

Compare expression of checked genes

Lus10033055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.