Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14920 187 / 6e-54 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 172 / 2e-48 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G66350 168 / 6e-47 GRAS RGL1 RGA-like 1 (.1) AT3G03450 166 / 6e-46 GRAS RGL2 RGA-like 2 (.1) AT2G01570 145 / 2e-38 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G41920 92 / 3e-20 GRAS GRAS family transcription factor (.1) AT5G66770 81 / 2e-16 GRAS GRAS family transcription factor (.1) AT1G50420 80 / 4e-16 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT3G54220 78 / 3e-15 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G48150 71 / 4e-13 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017758 [exp] 431 / 1e-147 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10009134 [exp] 129 / 2e-33 AT2G01570 248 / 2e-95 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10028511 [exp] 129 / 2e-32 AT5G17490 527 / 0.0 RGA-like protein 3 (.1) Lus10033583 [exp] 127 / 8e-32 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 125 / 3e-31 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10041540 [exp] 111 / 4e-26 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 110 / 6e-26 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10003540 [exp] 83 / 6e-17 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10033912 [exp] 82 / 1e-16 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G110700 [exp] 147 / 7e-39 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 144 / 1e-37 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 142 / 7e-37 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 141 / 9e-37 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 96 / 4e-21 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.005G226800 [exp] 84 / 2e-17 AT3G54220 424 / 3e-142 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.002G036100 [exp] 82 / 1e-16 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.015G091200 [exp] 82 / 1e-16 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.019G085600 [exp] 79 / 7e-16 AT2G04890 193 / 9e-57 SCARECROW-like 21 (.1) Potri.005G123800 [exp] 79 / 8e-16 AT5G66770 650 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family CL0063 [flax] [poplar] PF12041 [flax] [poplar] DELLA Transcriptional regulator DELLA protein N terminal
Representative CDS sequence Show only first row Show all	>Lus10033060 pacid=23176991 polypeptide=Lus10033060 locus=Lus10033060.g ID=Lus10033060.BGIv1.0 annot-version=v1.0 ATGGTACCCTACGAGACTACCGCCGCCGCTCCTCCTCCACCAAATCCAATCTCGAACCATCATCCAGCAGTCAGTTCATCATCCTCCTCCGCCATCTCAA AGCCACCGGAGATAGATGGCCTCCTCGCCGGAGCCGGTTACAAGGTCCGTTCCTCTGACCTCCGCCACGTCGCTCATCGTCTCGAGCGCCTCGAAACAGC GATGCTCAACTCCCCATCACAACACCTCTCCCTCTTAGCATCCGACGCTGTTCTCTACAACCCTTCCGATCTCTCCTCCTGGGTCGATACGCTCTTGACA GAGCTCAACCAGTCTCAGTCCTTCCCTTCTCTACCTTCGGATCTCTCGGATCTCATTTCCAATCCCACCGCTATCGACACCCCCTGGATCGACCAAATTC AGCCCCCATCTCAACAACAACAACAACAACCACCGCAATTGACGGTGGCGAAGGGGGTGGTGGAGGAGGACTCCGGCATACGCCTTGTCCACATGTTAAT GACCTGTGCTGAGTACATCCAGCGTGGCGAGCTGGCATTGGCTGGTTCCTTGATCCAGGATATGCAAGGGCTGTTGACGCGAGTCGACAACGGGTGTGGC ATCGGGAAAGTGGCCGGGTACTTCATCGACGCACTAACCCGACGGATATTCGCTCCGGTAACCGCCACCGTGGGTCCGGGCTCCGCTTACGAGACCGAGA TTCTTTACCATCATTTCTACGAGGCCTGTCCGTACCTGAAGTTCGCCCACTTTACAGCTAATCAAGCGATCCTCGAAGCGTTCGACGGTCACGATTGCGT CCACGTGGTTGACTTCAACCTGATGCACGGTCTACAGTGGCCGGCACTGATACAGGCGCTGGCACTTCGCCCAGGTGGTCCCCCTCTGTTAAGGCTGACA GGAATTGGCCCACCTTCACCTGACGGGCGCGACCAGCTCCGTGAAATCGGGCTCCGACTCGCCGAGTTGGCCCGATCCGTCAACGTCCGGCGGAGCCTTA ACCGTCCGGTCCGCCTTCCGTGGGGTGGCGGCTTCACGGCTCGAAGACGTCAAGCCGTGGATGCTCCAGGTCAACCCGAAGGAAGCCGTGGCGGTGAACT CAATCATGCAGCTCCACAAGCTATTAGCATCCGACCCGAGTTCGACAACCCGGAACACCGCCCCGATCGAGATGGTACTGGGTTGGATCCGGAGCCTGAA CCCGAAAATCATGACAGTGGTGGAGCAGGAAGCTAA
AA sequence Show only first row Show all	>Lus10033060 pacid=23176991 polypeptide=Lus10033060 locus=Lus10033060.g ID=Lus10033060.BGIv1.0 annot-version=v1.0 MVPYETTAAAPPPPNPISNHHPAVSSSSSSAISKPPEIDGLLAGAGYKVRSSDLRHVAHRLERLETAMLNSPSQHLSLLASDAVLYNPSDLSSWVDTLLT ELNQSQSFPSLPSDLSDLISNPTAIDTPWIDQIQPPSQQQQQQPPQLTVAKGVVEEDSGIRLVHMLMTCAEYIQRGELALAGSLIQDMQGLLTRVDNGCG IGKVAGYFIDALTRRIFAPVTATVGPGSAYETEILYHHFYEACPYLKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLT GIGPPSPDGRDQLREIGLRLAELARSVNVRRSLNRPVRLPWGGGFTARRRQAVDAPGQPEGSRGGELNHAAPQAISIRPEFDNPEHRPDRDGTGLDPEPE PENHDSGGAGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10033060 [exp]	0	1
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10033061 [exp]	1.0	0.8863
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10034538 [exp]	8.9	0.8323
					Lus10026715 [exp]	15.6	0.8554
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10024882 [exp]	16.1	0.8332
AT1G73660			protein tyrosine kinase family...		Lus10031341 [exp]	16.3	0.8243
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015518 [exp]	20.0	0.8368
AT5G09310			unknown protein		Lus10037415 [exp]	20.6	0.8408
AT5G63380			AMP-dependent synthetase and l...		Lus10022335 [exp]	24.3	0.7921
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10000105 [exp]	26.1	0.8269
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031330 [exp]	27.6	0.8392

Compare expression of checked genes

Lus10033060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.