Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14920 141 / 1e-40 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 135 / 3e-38 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT3G03450 133 / 2e-37 GRAS RGL2 RGA-like 2 (.1) AT1G66350 127 / 1e-35 GRAS RGL1 RGA-like 1 (.1) AT5G17490 125 / 1e-34 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G50600 87 / 5e-21 GRAS SCL5 scarecrow-like 5 (.1) AT1G50420 82 / 3e-19 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT2G04890 82 / 5e-19 GRAS SCL21 SCARECROW-like 21 (.1) AT5G48150 80 / 2e-18 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT3G54220 76 / 6e-17 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017758 [exp] 267 / 2e-88 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10009133 [exp] 139 / 7e-43 AT1G14920 286 / 3e-95 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Lus10028511 [exp] 141 / 2e-40 AT5G17490 527 / 0.0 RGA-like protein 3 (.1) Lus10017626 [exp] 139 / 1e-39 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10033583 [exp] 139 / 2e-39 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10041540 [exp] 104 / 8e-27 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 103 / 1e-26 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10036932 [exp] 94 / 3e-23 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10037055 [exp] 94 / 4e-23 AT1G66350 258 / 5e-80 RGA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G110700 [exp] 153 / 1e-44 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 147 / 2e-42 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 144 / 2e-41 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 142 / 8e-41 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 103 / 1e-26 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.001G361700 [exp] 96 / 8e-24 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.005G095100 [exp] 94 / 3e-23 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.015G091200 [exp] 92 / 8e-23 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.012G093900 [exp] 91 / 4e-22 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.003G202100 [exp] 87 / 4e-21 AT1G50420 568 / 0.0 scarecrow-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10033061 pacid=23176971 polypeptide=Lus10033061 locus=Lus10033061.g ID=Lus10033061.BGIv1.0 annot-version=v1.0 ATGTTCGATTCGCTGGACGCGTGTTCAATCCAGGCGGCGGAGAAGGCGGTAGCGGAGATGTACATACAGAAGGAGATATGCAATGTGGTAAGCTGCGAAG GGTCGGCTCGGCTTGAGCGGCACGAACCGCTGTCGAAGTGGAGGGAGCGGCTGAACGAGGCTGGGTTCAAGCCGCTACATTTGGGATCCAACGCATTCAA GCAGGCTAGCATGTTGTTGACTCTGTTTTCGGCGGAAGGTTACAGCGTTGAGGAAACCGACGGTTGCTTGACTTTGGGATGGCATAGCCGGCCACTGATC GCGGCCTCAGCTTGGCAGGCGTTACCGGAGATTCCAGTTCCGGATATTGCGGTGGTTAATGAGAGAAACGGCGGAGCGGGTCTGCTGTAA
AA sequence Show only first row Show all	>Lus10033061 pacid=23176971 polypeptide=Lus10033061 locus=Lus10033061.g ID=Lus10033061.BGIv1.0 annot-version=v1.0 MFDSLDACSIQAAEKAVAEMYIQKEICNVVSCEGSARLERHEPLSKWRERLNEAGFKPLHLGSNAFKQASMLLTLFSAEGYSVEETDGCLTLGWHSRPLI AASAWQALPEIPVPDIAVVNERNGGAGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10033061 [exp]	0	1
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10033060 [exp]	1.0	0.8863
AT5G63380			AMP-dependent synthetase and l...		Lus10022335 [exp]	6.5	0.8176
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Lus10037094 [exp]	12.8	0.8473
AT5G09310			unknown protein		Lus10037415 [exp]	16.2	0.8558
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10029417 [exp]	17.5	0.8729
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005159 [exp]	20.9	0.7986
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10036432 [exp]	21.2	0.8555
AT1G70590			F-box family protein (.1)		Lus10026694 [exp]	23.9	0.7984
AT2G24580			FAD-dependent oxidoreductase f...		Lus10020132 [exp]	26.5	0.8099
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10013376 [exp]	27.3	0.8226

Compare expression of checked genes

Lus10033061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.