Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28470 213 / 2e-66 MYB TDF1, ATMYB35 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) AT5G56110 199 / 3e-61 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT1G09540 182 / 3e-54 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT4G01680 178 / 4e-54 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT3G02940 180 / 6e-54 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 180 / 1e-53 MYB ATMYB9 myb domain protein 9 (.1.2) AT1G57560 179 / 2e-53 MYB ATMYB50 myb domain protein 50 (.1) AT5G15310 179 / 2e-53 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT4G21440 179 / 5e-53 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G26660 176 / 6e-52 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036660 [exp] 535 / 0 AT3G28470 213 / 2e-66 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10005834 [exp] 239 / 9e-77 AT3G28470 283 / 2e-94 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10039462 [exp] 239 / 2e-76 AT3G28470 284 / 9e-95 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10038022 [exp] 186 / 2e-54 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10033003 [exp] 182 / 9e-54 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10026620 [exp] 179 / 1e-53 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10018418 [exp] 175 / 8e-52 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 172 / 2e-50 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10006740 [exp] 173 / 5e-50 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G067700 [exp] 297 / 2e-98 AT3G28470 222 / 6e-70 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Potri.012G072500 [exp] 281 / 2e-92 AT3G28470 228 / 3e-72 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Potri.017G075000 [exp] 247 / 6e-79 AT3G28470 254 / 2e-82 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Potri.011G167600 [exp] 201 / 6e-62 AT5G56110 338 / 3e-116 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) Potri.001G470500 [exp] 200 / 2e-61 AT5G56110 334 / 2e-114 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) Potri.002G185900 [exp] 191 / 1e-56 AT1G09540 291 / 5e-95 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.014G111200 [exp] 190 / 3e-56 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.011G041600 [exp] 181 / 1e-53 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.015G082700 [exp] 181 / 1e-53 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.004G033100 [exp] 181 / 2e-53 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033119 pacid=23177059 polypeptide=Lus10033119 locus=Lus10033119.g ID=Lus10033119.BGIv1.0 annot-version=v1.0 ATGGTGAGGCCTCCATCTTGCTGTGGAAATGTGAACTTGAAAAGGGGACTTTGGACTCCTGATGAAGATGCCAAGATCCTTGCTCATGTCGCCAAATATG GCACTGGCAACTGGACTTCTGTCCCCAAAAAAGCAGGGCTACGTAGATGTGGGAAGAGCTGCAGGCTGAGATGGAACAATTACCTGAGGCCAGATCTCAA CCATGAAACCTTCAAACCTGAAGAGGAAGAGATGATTGTCAGGCTCCATTCTGCCATTGGTAGCAGGTGGTCAATAATAGCACAGCAGCTTCCAGGAAGG ACAGACAACGATGTGAAAAACCACTGGAACACAAAGCTGAGGAAGAAGCTTTCTGAAATGGGGATTGATCCTGTTACCCACAAACCATTTTCTCAGATCC TGACAGACTACGGTAACATCAATGGCGGCCTCTCCAGATCACCTTCCACCACCAGAATTGGATCCCTCAGCAGAGACCTCAAGAATGCTACTAGTAATAC TACTATAGTGTTCGTCCACAATCCTCTTCCTCAATCATCCGTCAATTTCATGGAGTCAGAGTCAGAGTCAGAAATAACTATTTCAGAAAGTTTCATAATC GACACTGATCATGTGAAGGAGGAACAGTCAATGGACCTCCTGGAGCAACTCCAGGCTATCAAATTGGTGATTGAAGCAGGGAATTGCAAAGATGAAAATG TGACTCCGGCAGCGGGGAACCCATCGTGTTCCTCGTCATCTTCGTCGACCTGCTCCACAACAGCGGCTCAGGAGATGACGATGATGACTATGAAGTCATC CCCGCAGGCTTTTAGCTGGCGGGATTTCCTGCTGGAAGACGATGATGATTTAGATCAACTACTCCCTGACGGAAATGATGATGATGATGATGACGTTATT ATAAGTAGGGATCAGTTGTGGTCTTCAGGGGAGAAACAGAGGCTGCCGCGGCATAAGCAGAATTGTTACGGTGCGGCAGCGTCTAACGTTAACGGGGGAC CCACTACTTCATCTTCGTTCGTTGACGCAATATTGGATGGAGATCGACGGCATGACATGTTCTTGGATTTCTCTAGCCTGTTGCAGGATCCAAATTACTA A
AA sequence Show only first row Show all	>Lus10033119 pacid=23177059 polypeptide=Lus10033119 locus=Lus10033119.g ID=Lus10033119.BGIv1.0 annot-version=v1.0 MVRPPSCCGNVNLKRGLWTPDEDAKILAHVAKYGTGNWTSVPKKAGLRRCGKSCRLRWNNYLRPDLNHETFKPEEEEMIVRLHSAIGSRWSIIAQQLPGR TDNDVKNHWNTKLRKKLSEMGIDPVTHKPFSQILTDYGNINGGLSRSPSTTRIGSLSRDLKNATSNTTIVFVHNPLPQSSVNFMESESESEITISESFII DTDHVKEEQSMDLLEQLQAIKLVIEAGNCKDENVTPAAGNPSCSSSSSSTCSTTAAQEMTMMTMKSSPQAFSWRDFLLEDDDDLDQLLPDGNDDDDDDVI ISRDQLWSSGEKQRLPRHKQNCYGAAASNVNGGPTTSSSFVDAILDGDRRHDMFLDFSSLLQDPNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10033119 [exp]	0	1
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10028860 [exp]	16.1	0.7565
AT5G20270		HHP1	heptahelical transmembrane pro...		Lus10038120 [exp]	26.8	0.6851
AT3G06840			unknown protein		Lus10006494 [exp]	47.1	0.6429
					Lus10014855 [exp]	48.7	0.6639
					Lus10043450 [exp]	59.4	0.6133
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10042395 [exp]	109.7	0.5650
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10019789 [exp]	112.9	0.6220
AT1G49960			Xanthine/uracil permease famil...		Lus10006134 [exp]	113.0	0.6397
					Lus10042473 [exp]	121.1	0.6066
					Lus10018645 [exp]	122.1	0.6217

Compare expression of checked genes

Lus10033119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.