Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64640 166 / 4e-52 AtENODL8 early nodulin-like protein 8 (.1) AT1G79800 84 / 5e-20 AtENODL7 early nodulin-like protein 7 (.1) AT5G53870 85 / 2e-19 AtENODL1 early nodulin-like protein 1 (.1) AT3G20570 82 / 3e-19 AtENODL9 early nodulin-like protein 9 (.1) AT4G28365 81 / 8e-19 AtENODL3 early nodulin-like protein 3 (.1) AT1G48940 78 / 3e-18 AtENODL6 early nodulin-like protein 6 (.1) AT4G32490 78 / 8e-18 AtENODL4 early nodulin-like protein 4 (.1) AT4G30590 76 / 3e-17 AtENODL12 early nodulin-like protein 12 (.1) AT2G23990 76 / 3e-17 AtENODL11 early nodulin-like protein 11 (.1.2) AT4G31840 75 / 5e-17 AtENODL15 early nodulin-like protein 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000336 [exp] 304 / 2e-105 AT1G64650 170 / 1e-52 Major facilitator superfamily protein (.1.2) Lus10043063 [exp] 85 / 2e-20 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10032111 [exp] 82 / 2e-19 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10011158 [exp] 82 / 3e-19 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1) Lus10022318 [exp] 82 / 3e-19 AT3G18590 146 / 4e-45 early nodulin-like protein 5 (.1) Lus10014880 [exp] 78 / 5e-18 AT3G18590 144 / 1e-43 early nodulin-like protein 5 (.1) Lus10003432 [exp] 76 / 5e-17 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1) Lus10026880 [exp] 75 / 8e-17 AT5G25090 167 / 8e-53 early nodulin-like protein 13 (.1) Lus10018758 [exp] 72 / 7e-16 AT1G79800 142 / 2e-43 early nodulin-like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G085100 [exp] 219 / 3e-73 AT1G64640 150 / 3e-46 early nodulin-like protein 8 (.1) Potri.011G135400 [exp] 94 / 8e-24 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.001G338800 [exp] 86 / 3e-21 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1) Potri.018G018200 [exp] 82 / 1e-19 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.015G052000 [exp] 81 / 5e-19 AT1G48940 163 / 1e-51 early nodulin-like protein 6 (.1) Potri.006G264600 [exp] 80 / 7e-19 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.001G187700 [exp] 78 / 4e-18 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1) Potri.011G117800 [exp] 81 / 6e-18 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.001G419200 [exp] 79 / 6e-18 AT3G20570 153 / 1e-46 early nodulin-like protein 9 (.1) Potri.003G050500 [exp] 78 / 7e-18 AT1G79800 162 / 1e-50 early nodulin-like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10033227 pacid=23172115 polypeptide=Lus10033227 locus=Lus10033227.g ID=Lus10033227.BGIv1.0 annot-version=v1.0 ATGACCAATCTTACAACTCCCAAGTTCCTGGCTCTCTGTGCCTTTCAGCTTCTTGCTTTGCTTCACATCCAAGTCTCCTGCTACCAGTACAAGGTTGGAG ATTTAGACGCTTGGGGGATCCCCACTGACTCAAACCCCAAAGTCTACATCTATTGGTCCAAATATCACAACTTAACTGTTGGAGATTCCCTCTTGTTTCT GTACCCACCAAGCCAAGACTCAGTAATCCAAGTAACCCCACAGAACTTCGACTCCTGCAACCTGAAAAACCCAATCTTGTACATGAACAATGGCAACTCC TTGTTCAACATCACCCAAGAAGGTGTGTTTTACTTCACCAGTGGGGAGCCAGGACGCTGCGAGAAGAAGCAGAAGATTCGGATAACTGTAGGGAATGAAT CTGCAACTGCTTATCCTCCTTCTTACGGCCCTGGTGGAGCATTGGCTGATTCTGCTCCCACTTCCCCGATTGCATTTGGATCCATCCCTACTTCTTCTTC CTCTTATTCATTGGAACCCAGATTCTCTGTCCTCTTATCAGTTGTTATTGGATCGCTGGTCTCTGGTATTATGAGAGCAGGATTCATGTGA
AA sequence Show only first row Show all	>Lus10033227 pacid=23172115 polypeptide=Lus10033227 locus=Lus10033227.g ID=Lus10033227.BGIv1.0 annot-version=v1.0 MTNLTTPKFLALCAFQLLALLHIQVSCYQYKVGDLDAWGIPTDSNPKVYIYWSKYHNLTVGDSLLFLYPPSQDSVIQVTPQNFDSCNLKNPILYMNNGNS LFNITQEGVFYFTSGEPGRCEKKQKIRITVGNESATAYPPSYGPGGALADSAPTSPIAFGSIPTSSSSYSLEPRFSVLLSVVIGSLVSGIMRAGFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	0	1
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	1.0	0.9914
					Lus10024349 [exp]	2.4	0.9816
AT3G24450			Heavy metal transport/detoxifi...		Lus10017730 [exp]	3.2	0.9710
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	3.9	0.9813
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	4.5	0.9805
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	4.5	0.9790
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10033939 [exp]	4.9	0.9769
AT1G47740			PPPDE putative thiol peptidase...		Lus10011291 [exp]	5.3	0.9683
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10018765 [exp]	5.7	0.9717
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10018766 [exp]	5.9	0.9724

Compare expression of checked genes

Lus10033227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.