Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04900 477 / 5e-170 NOL NYC1-like (.1) AT4G13250 201 / 4e-60 NYC1, NYC NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G24360 79 / 3e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G10310 71 / 8e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10050 71 / 1e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03980 68 / 6e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 68 / 8e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G05530 62 / 6e-11 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT5G18210 61 / 1e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G13180 61 / 2e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034874 [exp] 496 / 8e-179 AT5G04900 466 / 7e-167 NYC1-like (.1) Lus10023644 [exp] 214 / 5e-65 AT4G13250 716 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10034917 [exp] 208 / 1e-64 AT4G13250 543 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10001560 [exp] 78 / 1e-15 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001430 [exp] 72 / 3e-14 AT4G05530 369 / 2e-130 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10020019 [exp] 72 / 5e-14 AT4G05530 395 / 5e-141 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10040733 [exp] 71 / 1e-13 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 71 / 1e-13 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 70 / 2e-13 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G014200 [exp] 505 / 0 AT5G04900 511 / 0.0 NYC1-like (.1) Potri.018G081200 [exp] 215 / 3e-65 AT4G13250 696 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G206800 [exp] 79 / 1e-16 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 76 / 4e-15 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 72 / 5e-14 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G228533 [exp] 69 / 3e-13 AT1G10310 376 / 1e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G022500 [exp] 69 / 3e-13 AT4G05530 373 / 5e-132 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.006G206900 [exp] 69 / 4e-13 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 67 / 2e-12 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 66 / 3e-12 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10033408 pacid=23172205 polypeptide=Lus10033408 locus=Lus10033408.g ID=Lus10033408.BGIv1.0 annot-version=v1.0 ATGAGCGCGGCTTCCATGGCTTCCTATTCTACTTATTCTTCTTCTTTCAGTTTTCTGCAATTCCTCCTCTACTCTACTTCCTCTCATCATCATCTGCCAC TTCCGCGTTCCTTTTCTCTCCAATTCCGTCATCACGCAACTCTTTCGTCTAACGGCCGGAGTCCTGTCAACCAAAACCGACGCTGTTCGTCGAAAAGGTT TGCCGCTCTGACTTCTCCGGTAATCAAGGCCCAAGCTTCCGTCACTAGAGAGCCCATGGTTCCTCCTTACAATGTGCTCATCACCGGTTCCACTAAAGGT ATAGGTTATGCACTGGCTAAAGGGTTCCTAGAGGCTGGTGACAATGTCGTTATATGCTCAAGATCAGCTGAAAGGGTCGAGTCAGCTGTCCAGAGCCTGA GAAAAGAATTTGGAGAGCAGCATGTGTGGGGTACGACTTGTGATGTTAGAGAAGGAAAAGATGTCAAGAATTTAGTCGCATTTGCTCAGGGAAAACTAAA ATATATCGATCTATGGATTAATAATGCTGGATCAAATGCATATAGCTTTAAGCCCTTAGCAGAATCCTCAGATGAAGACCTTATAGAAGTCGTTACCACA AACACCCTCGGATTGATGATATGTTGCCGAGAGGCAATAATAATGATGCTGAACCAACCTCGAGGGGGTCATATATTCAACATTGATGGCGCTGGTTCTG ATGGAAGACCTACCCCCAGGTTTGCAGCATACGGGGCAACTAAGCGCAGTGTGGTGCACTTGACAAAGTCCTTGCAGGCTGAGCTGCAGATGCAGGATGT TCAAAATGTTGTAGTACACAATCTTTCGCCTGGAATGGTAACAACCGACCTCCTAATGTCTGGAGCTACAACAAAGCAGGCAAAGTTCTTCATTAATGTC CTGGCTGAACCTCCAGAAGTGGTTGCAGAGTATCTGGTTCCAAATATCAGATCAATTCCAGGGAATGGATCAAAGAGACCTACATATATAAGAATTGCAT TTGGTGCAAGAAGGAACAGATACATGGTTGAAGATTGA
AA sequence Show only first row Show all	>Lus10033408 pacid=23172205 polypeptide=Lus10033408 locus=Lus10033408.g ID=Lus10033408.BGIv1.0 annot-version=v1.0 MSAASMASYSTYSSSFSFLQFLLYSTSSHHHLPLPRSFSLQFRHHATLSSNGRSPVNQNRRCSSKRFAALTSPVIKAQASVTREPMVPPYNVLITGSTKG IGYALAKGFLEAGDNVVICSRSAERVESAVQSLRKEFGEQHVWGTTCDVREGKDVKNLVAFAQGKLKYIDLWINNAGSNAYSFKPLAESSDEDLIEVVTT NTLGLMICCREAIIMMLNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVQNVVVHNLSPGMVTTDLLMSGATTKQAKFFINV LAEPPEVVAEYLVPNIRSIPGNGSKRPTYIRIAFGARRNRYMVED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04900		NOL	NYC1-like (.1)		Lus10033408 [exp]	0	1
AT5G03880			Thioredoxin family protein (.1...		Lus10017034 [exp]	1.4	0.9329
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Lus10018218 [exp]	4.2	0.9316
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	5.7	0.9313
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10005365 [exp]	6.3	0.9149
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	7.4	0.9214
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10005581 [exp]	7.7	0.9292
AT5G51290			Diacylglycerol kinase family p...		Lus10016714 [exp]	7.9	0.8946
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10035853 [exp]	11.2	0.9210
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Lus10017443 [exp]	11.2	0.8862
AT2G45290			Transketolase (.1)		Lus10031128 [exp]	12.0	0.9133

Compare expression of checked genes

Lus10033408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.