Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22640 195 / 2e-61 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G09460 194 / 2e-61 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT2G16720 195 / 5e-61 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT5G49330 194 / 9e-60 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT2G47460 194 / 1e-59 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) AT4G38620 191 / 2e-59 MYB AtMYB4 myb domain protein 4 (.1) AT3G23250 191 / 3e-59 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT3G13540 190 / 3e-59 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT1G35515 187 / 9e-59 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT4G21440 191 / 2e-58 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000470 [exp] 517 / 0 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10000008 [exp] 187 / 2e-60 AT5G49330 142 / 5e-43 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10009448 [exp] 192 / 6e-60 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10033889 [exp] 192 / 1e-59 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10000411 [exp] 191 / 3e-59 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10001548 [exp] 191 / 3e-59 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10016948 [exp] 189 / 9e-59 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10041888 [exp] 187 / 2e-58 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10019085 [exp] 190 / 8e-58 AT5G07700 239 / 3e-76 myb domain protein 76 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G221800 [exp] 231 / 8e-75 AT4G38620 197 / 5e-62 myb domain protein 4 (.1) Potri.018G049600 [exp] 228 / 2e-73 AT2G16720 192 / 4e-60 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.018G049401 [exp] 223 / 1e-71 AT2G16720 190 / 4e-59 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.018G049200 [exp] 224 / 6e-70 AT2G16720 189 / 8e-57 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.002G173900 [exp] 212 / 1e-67 AT3G13540 207 / 4e-66 myb domain protein 5 (.1) Potri.014G100800 [exp] 211 / 2e-67 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.003G144200 [exp] 211 / 4e-67 AT5G49330 205 / 2e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.001G086700 [exp] 207 / 8e-66 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.003G144300 [exp] 207 / 9e-66 AT1G22640 197 / 1e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.006G275900 [exp] 200 / 1e-62 AT1G22640 186 / 1e-57 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033438 pacid=23172244 polypeptide=Lus10033438 locus=Lus10033438.g ID=Lus10033438.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGCCCTTGTTGTTCAAAGGAAGGAATGAACAGAGGCGCATGGACAGCTGAGGAGGACCAGCTCCTGACCCGCTACATCCAATCCCACGGAA TTGGAAAATGGCGTAACCTACCGAAGAAAGCTGGCCTGAACCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGCTCAATTACTTGCGCCCTGACATCAAGCG CGGCAACATTTCCCCCGACGAGGAAGACCTTATCATCCGCCTCCACAAACTCTTAGGCAACCGATGGTCGCTCATAGCTGGTAGACTTCCGGGACGAACA GACAACGAAATTAAAAATTACTGGAACACTAATTTGGGGAAAAGAGTGTTATTGGAGAATCGTTTCCCAATACCCGCATCTTCTTCTACTTGTCTCACAA AACCTCGTAGTAGGAAATTGATGATTTCCACATCTAGCGACGCCCAGCTAGTTACTACAAAAAAATATAGTTTTAGTGACCAACAGGTGATCAAAACCAA GGCCCTGAAGTGCTCGTCTAACCAGCTTCTTTTCTACCAGCAGCCAAATTTAGCAATGGGCAAGAGAAGTAATAATATTGATACCCTGGAGACCTCATCG TCTAACGAGCTGTCCTGCGTTGACGGCACTAGTAGTAATAGTCACACAAACAACGCACTGCATGAGGGAAGTGATGAGTTAATTATGACGATGGATTTCG GGGCAGGACCTGAGATATCTTTATCGGACCTTCTGCTGGGTTGCGAGGATGGGTTGAGGGATTTGTGCGATTTCAACATGATCAACAGCAGCAGCAGCAG TAAAGGTACTGATCCAGAGCTATTGATCTCGTCGGAGGAGATGTTGGACGAGGCCACTTGGAATAATATTGATGTCATTGATCATCAGGCGGCGGCATGA
AA sequence Show only first row Show all	>Lus10033438 pacid=23172244 polypeptide=Lus10033438 locus=Lus10033438.g ID=Lus10033438.BGIv1.0 annot-version=v1.0 MGRSPCCSKEGMNRGAWTAEEDQLLTRYIQSHGIGKWRNLPKKAGLNRCGKSCRLRWLNYLRPDIKRGNISPDEEDLIIRLHKLLGNRWSLIAGRLPGRT DNEIKNYWNTNLGKRVLLENRFPIPASSSTCLTKPRSRKLMISTSSDAQLVTTKKYSFSDQQVIKTKALKCSSNQLLFYQQPNLAMGKRSNNIDTLETSS SNELSCVDGTSSNSHTNNALHEGSDELIMTMDFGAGPEISLSDLLLGCEDGLRDLCDFNMINSSSSSKGTDPELLISSEEMLDEATWNNIDVIDHQAAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Lus10033438 [exp]	0	1

Compare expression of checked genes

Lus10033438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.