Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78080 175 / 4e-52 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1) AT1G22190 145 / 3e-41 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT4G39780 138 / 1e-38 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G22200 133 / 8e-37 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G36060 133 / 4e-36 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G65130 113 / 4e-29 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G64380 103 / 8e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G13620 100 / 3e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G20880 96 / 4e-22 AP2_ERF AtERF53 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) AT4G28140 83 / 7e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020913 [exp] 322 / 5e-109 AT1G78080 246 / 2e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10016801 [exp] 164 / 1e-47 AT1G78080 245 / 3e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10022497 [exp] 161 / 1e-46 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10000582 [exp] 132 / 1e-36 AT4G39780 208 / 2e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10019665 [exp] 127 / 1e-34 AT4G39780 209 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10003889 [exp] 112 / 2e-28 AT1G64380 197 / 4e-61 Integrase-type DNA-binding superfamily protein (.1) Lus10001898 [exp] 110 / 1e-27 AT1G64380 210 / 1e-65 Integrase-type DNA-binding superfamily protein (.1) Lus10018578 [exp] 100 / 3e-23 AT2G20880 195 / 3e-59 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Lus10016669 [exp] 98 / 4e-23 AT4G13620 184 / 2e-55 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G094200 [exp] 206 / 8e-64 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G168700 [exp] 204 / 6e-63 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.007G090600 [exp] 172 / 2e-50 AT1G78080 205 / 4e-63 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G077300 [exp] 168 / 9e-49 AT1G78080 207 / 7e-64 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.001G092400 [exp] 106 / 3e-26 AT1G64380 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Potri.017G055400 [exp] 102 / 5e-24 AT4G13620 216 / 9e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.003G139300 [exp] 100 / 9e-24 AT1G64380 173 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Potri.001G315300 [exp] 97 / 6e-22 AT4G13620 194 / 3e-57 Integrase-type DNA-binding superfamily protein (.1) Potri.013G135600 [exp] 93 / 1e-20 AT2G20880 180 / 2e-52 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.019G102200 [exp] 91 / 5e-20 AT2G20880 195 / 2e-58 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10033463 pacid=23143470 polypeptide=Lus10033463 locus=Lus10033463.g ID=Lus10033463.BGIv1.0 annot-version=v1.0 ATGGCAGCTACCATGGATTTTTTCAGTAGCGGACCAGTTCAGTCAGATCTCTATGAAGGTAGTGAGCTGATGGAAGCACTTGAACCTTTTATGAAAAGTG CTTCTCCTCCTTCTTCAGCTCCTTCTCCTCCTCCTCCTCCTCCATCTTTTATCCCTTCTTCTGAAACACTTGTTTCTTCTTCTTCTTCATCATCTTCTTT TCCTTCTACTTCTTACTCTTATGGAGATTACATCTCCTTTTCTTCACCTTCTTCTTTCCCTGCAGCTGCTCTTCCGCAGTTTCCGCCACCGCAGCAGCAG GCTTTTATTTATCCAGACGGATCCAACGGGTTTTTTTCGACCCAAGATCCGTTTCTCTACCAACAAACTGAACAGATTTATCAGATGCAGACTACCAACA ACCTCTGTTTCCAGAACCTTCCGGCTCAGCAGAATACTCTCAGCTTCCTTTCCCCTAGGGCTACCCCGATGAAGCTGACCGGCTCTCCACCGAAGGCCGC GAAGCTTTACCGCGGGGTTAGACAGAGGCACTGGGGGAAATGGGTGGCGGAGATCCGACTTCCGAAGAATCGGACCCGGCTCTGGCTCGGAACCTTCGAC ACCGCGGAGGAGGCCGCCTTGGCTTACGACAAGGCTGCGTACAAGCTCCGAGGCGACTTCGCGAGGCTGAATTTCCCTAACCTCCGCCACCAAGGGTCGC TTATTGAAGGCAAGTTCGGGGAGTACAAGCCGCTTCATTCTACAGTCGACGCTAAGCTCCAAGCTATTTGTCAGAGCTTGGCCGAGACTCAGAAGAAAGG GAAGGCTGTGGGGAAGAAGAAGTCATCGAAGAAGAAAGAGGAAGTTGTGGCTGTGAAGGAGGAGAAAGTGTCTCCGGTTGTGACGGATCACAGCGATTTC TCAGGCGGGTCTTCTTCTTCTCCGTTGTCAGATCTGACGTTTCCGGATTACCAAGATGCGGCGGCGCCGTTGGATCTTGATTCCGGGAATCTCAATCTGG AGAAGTATCCGTCTTACGAGATCGATTGGGATTCAATATTATCGTGA
AA sequence Show only first row Show all	>Lus10033463 pacid=23143470 polypeptide=Lus10033463 locus=Lus10033463.g ID=Lus10033463.BGIv1.0 annot-version=v1.0 MAATMDFFSSGPVQSDLYEGSELMEALEPFMKSASPPSSAPSPPPPPPSFIPSSETLVSSSSSSSSFPSTSYSYGDYISFSSPSSFPAAALPQFPPPQQQ AFIYPDGSNGFFSTQDPFLYQQTEQIYQMQTTNNLCFQNLPAQQNTLSFLSPRATPMKLTGSPPKAAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFD TAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSLIEGKFGEYKPLHSTVDAKLQAICQSLAETQKKGKAVGKKKSSKKKEEVVAVKEEKVSPVVTDHSDF SGGSSSSPLSDLTFPDYQDAAAPLDLDSGNLNLEKYPSYEIDWDSILS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10033463 [exp]	0	1
AT1G36980			unknown protein		Lus10035779 [exp]	8.1	0.8542
AT4G13530			unknown protein		Lus10002932 [exp]	8.1	0.8694
AT3G56310			Melibiase family protein (.1.2...		Lus10029046 [exp]	13.0	0.8683
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Lus10007764 [exp]	16.9	0.8411
AT4G13530			unknown protein		Lus10030342 [exp]	17.5	0.8432
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014994 [exp]	18.0	0.8427
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10041776 [exp]	22.6	0.7869
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10015642 [exp]	26.2	0.8289
AT4G15563			unknown protein		Lus10012807 [exp]	27.0	0.8438
AT3G09085			Protein of unknown function (D...		Lus10017182 [exp]	27.1	0.8077

Compare expression of checked genes

Lus10033463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.