Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16720 247 / 2e-82 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G09460 236 / 2e-78 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT4G38620 236 / 5e-78 MYB AtMYB4 myb domain protein 4 (.1) AT1G22640 232 / 8e-77 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G34990 232 / 2e-76 MYB ATMYB32 myb domain protein 32 (.1) AT1G35515 218 / 4e-72 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT5G16770 208 / 2e-66 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 207 / 2e-66 MYB ATMYB107 myb domain protein 107 (.1) AT4G28110 206 / 2e-66 MYB ATMYB41 myb domain protein 41 (.1) AT4G05100 207 / 4e-66 MYB ATMYB74 myb domain protein 74 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001548 [exp] 240 / 2e-79 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10000411 [exp] 239 / 5e-79 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10009448 [exp] 238 / 7e-79 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10016948 [exp] 238 / 8e-79 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10028435 [exp] 228 / 1e-75 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10041888 [exp] 226 / 6e-75 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10014129 [exp] 230 / 9e-71 AT4G38620 284 / 5e-90 myb domain protein 4 (.1) Lus10018418 [exp] 203 / 2e-64 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039743 [exp] 199 / 5e-64 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T011400 [exp] 247 / 8e-82 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.T011525 [exp] 247 / 8e-82 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.004G138000 [exp] 245 / 4e-81 AT4G38620 257 / 8e-85 myb domain protein 4 (.1) Potri.004G174400 [exp] 243 / 4e-81 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.013G109300 [exp] 243 / 2e-80 AT4G09460 262 / 9e-88 myb domain protein 6 (.1) Potri.019G081500 [exp] 242 / 3e-80 AT1G22640 277 / 1e-93 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.009G134000 [exp] 235 / 1e-77 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.005G112000 [exp] 231 / 2e-76 AT4G38620 277 / 5e-94 myb domain protein 4 (.1) Potri.010G114000 [exp] 216 / 5e-71 AT4G38620 243 / 6e-81 myb domain protein 4 (.1) Potri.004G088100 [exp] 214 / 5e-70 AT4G09460 227 / 5e-75 myb domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033473 pacid=23143399 polypeptide=Lus10033473 locus=Lus10033473.g ID=Lus10033473.BGIv1.0 annot-version=v1.0 ATGGGTAGATCTCCATGCTGTGAGAAAGAGCAGAACAACAAAGGAGCATGGACCAAAGAGGAAGACCAACGCCTTATCTCCTACATCAACCTCCATGGCC AAGGCTGCTGGAGGTCTCTCCCCCGTGCCGCCGGCTTGTTTAGATGCGGGAAGAGTTGTAGGCTGAGATGGATAAACTACTTAAGACCTGATCTCAAGAG AGGCAACTTCACTCACCAAGAAGACGAGCTTATCATCAACCTCCATAGCTTGCTTGGCAACAAGTGGTCGTTGATAGCCGCAAGGCTACCAGGGAGGACA GACAACGAGATAAAGAATTATTGGAACACCCATCTCAAGAGAAAGCTCTATAGCTGCGGCATCGACCCTCTCACCCACCGTTATCTCTCCAAAACAACCA CCACCACTATGACACCAATAAGAACAACACAAGGTAGCTCGCCACAAGAGTTTACCATGTTCATCGGCAACAACAATAACGTGGGGAACAGTGATGTCGA GGTTTCTAACAGTAGCGACAGTACGAGAGCTACAACAGCAGAAGGAAAGCTGAATCTAGAGCTATCAATCGGCCTGCCGAGTTTGTGTTGTAACGGAAGC TTGGGATCTCAGAGTAGTAGAGCTAGTAATCAGTCATTAATTAGCTCCAAACTTACATTAGCATCGGCAGATACTGGTTTCGGATTTTACAATGACGCTT AA
AA sequence Show only first row Show all	>Lus10033473 pacid=23143399 polypeptide=Lus10033473 locus=Lus10033473.g ID=Lus10033473.BGIv1.0 annot-version=v1.0 MGRSPCCEKEQNNKGAWTKEEDQRLISYINLHGQGCWRSLPRAAGLFRCGKSCRLRWINYLRPDLKRGNFTHQEDELIINLHSLLGNKWSLIAARLPGRT DNEIKNYWNTHLKRKLYSCGIDPLTHRYLSKTTTTTMTPIRTTQGSSPQEFTMFIGNNNNVGNSDVEVSNSSDSTRATTAEGKLNLELSIGLPSLCCNGS LGSQSSRASNQSLISSKLTLASADTGFGFYNDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10033473 [exp]	0	1
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022066 [exp]	2.8	0.9670
					Lus10011553 [exp]	3.0	0.9494
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10042612 [exp]	5.3	0.9470
AT4G24130			Protein of unknown function, D...		Lus10017330 [exp]	5.8	0.9519
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10041196 [exp]	8.9	0.9422
AT4G02830			unknown protein		Lus10042573 [exp]	11.0	0.9417
					Lus10031407 [exp]	11.4	0.9308
AT1G54540			Late embryogenesis abundant (L...		Lus10031888 [exp]	11.7	0.9404
AT2G37530			unknown protein		Lus10024416 [exp]	13.1	0.9355
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032554 [exp]	13.5	0.9416

Compare expression of checked genes

Lus10033473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.