Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64580 1050 / 0 EMB3144 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) AT5G42270 276 / 7e-82 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G50250 275 / 2e-81 FTSH1 FTSH protease 1 (.1) AT5G15250 274 / 3e-81 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G06430 274 / 3e-81 FTSH8 FTSH protease 8 (.1) AT2G30950 272 / 2e-80 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT3G02450 233 / 1e-66 cell division protein ftsH, putative (.1) AT3G47060 234 / 9e-66 FTSH7 FTSH protease 7 (.1) AT5G58870 227 / 3e-63 FTSH9 FTSH protease 9 (.1) AT3G16290 228 / 4e-63 EMB2083 embryo defective 2083, AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020879 [exp] 1362 / 0 AT5G64580 994 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) Lus10012277 [exp] 277 / 1e-84 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10016003 [exp] 277 / 6e-82 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10021824 [exp] 276 / 1e-81 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 270 / 1e-79 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 270 / 1e-78 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10018210 [exp] 246 / 4e-70 AT5G58870 1049 / 0.0 FTSH protease 9 (.1) Lus10040695 [exp] 242 / 1e-68 AT5G58870 1047 / 0.0 FTSH protease 9 (.1) Lus10001203 [exp] 239 / 2e-67 AT5G58870 1093 / 0.0 FTSH protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G059700 [exp] 1003 / 0 AT5G64580 1349 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) Potri.002G012000 [exp] 277 / 2e-82 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 275 / 3e-81 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 275 / 4e-81 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 273 / 5e-81 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.005G249200 [exp] 273 / 7e-81 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G220366 [exp] 251 / 1e-77 AT1G06430 405 / 1e-138 FTSH protease 8 (.1) Potri.004G106500 [exp] 242 / 5e-70 AT3G02450 657 / 0.0 cell division protein ftsH, putative (.1) Potri.001G249100 [exp] 231 / 7e-65 AT5G58870 997 / 0.0 FTSH protease 9 (.1) Potri.009G043100 [exp] 230 / 2e-64 AT5G58870 1039 / 0.0 FTSH protease 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10033496 pacid=23143492 polypeptide=Lus10033496 locus=Lus10033496.g ID=Lus10033496.BGIv1.0 annot-version=v1.0 ATGAAATGCATCGGCCCTGTTAACGCCGTCGCTCGATTCTCTCAGTCTTCTTCTTCCTCCTCCTCGTCTCAACTCTCCACTGCTCAGCGGTCGTTTAGGC TTCAATTGAGTTCCAGAAATGGACGCGCAGCTTTCGGATTCAGAACCAGAACCGCCAGAATTGGAGTTAGCACCGGTATCAGCGCGGCTTCGGAATCTAC CTCGGTTTCTTCGTCGGCGGAAGAGGAAGAAGCGACCAGGACGTTCGAGATGCTGAGAGAGGCGGAGCGTAAGAGGATAAGCGAGCTGGAAGAGCTGGAG AGGAAGTCGAATTTGCAGTTGGAGAGGCAGCTTGTTTTGGCTTCGGAATGGAGCAGGAAGTTTCTGACGATGCGCGGGAAGTTGAGAGGGACGGAGTGGG ATCCGGAGGACTCTCATATGATTGATTTTAGCGAGTTCTTGAAGCTTCTCAACTCGAATATGGTTCGCTTTATGGAGTACTCCGAATATGGCCAGACAGT TTCAGTTATTATTCCTTATAACAAAGATGGTGAAAATGAAGGGCAGAGAGAAGACCCAGAGAAGATTGTGTTTCGGCGTCATAGGGTAGAGTTCATGCCA GTTGACTGTTGGAATGATGTTTGGCACAAATTGCACCAGCAGGTTGTAAATGTTGATATACGTCATGCAAACGTAGTGCACGAAGGGTTCTACACTAGTG TTGTGGTTGGTGTAATCTGGTCAATTCGGCTTGCTATAGCTGTTGCATTGTATTTGTGGATCGATGATAAGATGAGACCAATTTATACAAAGATAGTATC TCGCGATTTGGGGAAGCCGACAAAAGCGATTAACCAGCCACTTAAACGCCAGGCGCTTGGTTCATTAGGCAAGAGTAGGGCAAAGTTTATATCAGCAGAA GAAACTACAGGTATTACTTTCGATGATTTTGCCGGACAGGAATATATAAAAAATGAACTTCAAGAGATAGTTCGGATTTTGAAGAATGATGAAGAGTTCC AAGACAAGGGCATATACTGTCCAAAAGGTGTCCTCCTTCATGGGCCTCCTGGTACTGGTAAAACACTGCTTGCAAAAGCTATTGCAGGTGAAGCGGGTCT TCCTTTCTTTGCTGCAAATGGCACTGATTTTGTAGAGATGTTTGTAGGTGTGGCTGCATCCCGTGTTAAGGATCTTTTTTCCAGTGCCAGATCATTTTCT CCTTCTATAATCTTTATTGACGAAATCGATGCTATTGGCAGCAAGCGTGGTGGTCCTGATGTTGGAGGGGGTGGAGCAGAGAGGGAACAAGGCCTACTTC AGATACTGACAGAAATGGATGGATTTAGGGAATTTACATCACAGGTTTTAGTAATTGGAGCAACTAATAGGCTCGACATACTTGATCCTGCTCTGCTGAG AAAAGGTCGTTTTGATAAGATTATAAGAGTTGGTTTGCCATCAAAAGATGGTAGATTGGCTATACTGAAGGTGCATGCAAGAAACAAATTTTTCCGATCA GAGGAAGAAAAGGAAACTCTTCTACAGGAGATTTCAGAACTTGCAGACAATTTTACTGGGGCAGAGCTGCAAAATATATTGAATGAAGCTGGTATATTGA CTGCTAGGAAGGATTTGGACTATATTGGGCGCGAGGAGCTAATGGAGGCTTTGAGAAGGCAATCGGGTACATTTGAAACTGGTCAAGAAGACAGTACTGA GGTTCCTGAAGAGTTAAGGTTAAGATTAGCTTACCGTGAAGCAGCTGTTGCTATCCTTGCATGCTTCTTTCCTGATCCGAACCGTCCTATCTCAGAGACA GATATTAATTCTATCCGTAGGAAGCCAAATATGCGATATGTAGAAACTCCTGGCAGGGTTTTTGGCAAGAAATCTGGTTATATAGACGAAATAGTGCGTG CATGTGCTCCTAGGGTAATTGAGGAGGAAATGTTTGGTGTAAGCAATCTGTGCTGGATCTCCGCAAAGGCTACATTAGAAGCTTCAACGTTTGTTGAGCG TTTGATTCTCCAAACTGGGATGACCGCATTTGGAAAAGGATACTACAAGAAACATGGTGATCTCGCGCCCAATCCTAATGTTAGCCCCATTGATGAACAC GGAGCCCTAATTTACGCTGGCCGATGGGGGATTCACGGGATCACTCTTCCTGGTAGGGTCACATTTGCCCCAGGCAATGTTGGATTCTCAACTTTCGGTG CTCCACGGCCCACCGAGACTCAAATCATCAGCGATGACACATGGAAGCTAATAGATCAGATTCGGGAGGAGAGAGTTCAAGAAATAAATTCTCAAGATGT GGAGGTTGAAGAAGAAAATGGGAGACCACAGCTTTTGATGGCTAGCCATTTCCTATAA
AA sequence Show only first row Show all	>Lus10033496 pacid=23143492 polypeptide=Lus10033496 locus=Lus10033496.g ID=Lus10033496.BGIv1.0 annot-version=v1.0 MKCIGPVNAVARFSQSSSSSSSSQLSTAQRSFRLQLSSRNGRAAFGFRTRTARIGVSTGISAASESTSVSSSAEEEEATRTFEMLREAERKRISELEELE RKSNLQLERQLVLASEWSRKFLTMRGKLRGTEWDPEDSHMIDFSEFLKLLNSNMVRFMEYSEYGQTVSVIIPYNKDGENEGQREDPEKIVFRRHRVEFMP VDCWNDVWHKLHQQVVNVDIRHANVVHEGFYTSVVVGVIWSIRLAIAVALYLWIDDKMRPIYTKIVSRDLGKPTKAINQPLKRQALGSLGKSRAKFISAE ETTGITFDDFAGQEYIKNELQEIVRILKNDEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFSSARSFS PSIIFIDEIDAIGSKRGGPDVGGGGAEREQGLLQILTEMDGFREFTSQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDGRLAILKVHARNKFFRS EEEKETLLQEISELADNFTGAELQNILNEAGILTARKDLDYIGREELMEALRRQSGTFETGQEDSTEVPEELRLRLAYREAAVAILACFFPDPNRPISET DINSIRRKPNMRYVETPGRVFGKKSGYIDEIVRACAPRVIEEEMFGVSNLCWISAKATLEASTFVERLILQTGMTAFGKGYYKKHGDLAPNPNVSPIDEH GALIYAGRWGIHGITLPGRVTFAPGNVGFSTFGAPRPTETQIISDDTWKLIDQIREERVQEINSQDVEVEEENGRPQLLMASHFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10033496 [exp]	0	1
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10036490 [exp]	1.4	0.9510
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10010356 [exp]	2.8	0.9358
AT4G23940			FtsH extracellular protease fa...		Lus10032404 [exp]	3.5	0.9151
AT1G30680			toprim domain-containing prote...		Lus10038434 [exp]	4.0	0.9049
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10022181 [exp]	5.5	0.9092
					Lus10036489 [exp]	5.5	0.9223
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10005637 [exp]	5.7	0.8783
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	5.9	0.9126
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10014211 [exp]	12.2	0.8635
AT1G30680			toprim domain-containing prote...		Lus10023379 [exp]	12.8	0.8957

Compare expression of checked genes

Lus10033496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.