Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08250 145 / 4e-38 GRAS GRAS family transcription factor (.1) AT1G55580 116 / 3e-28 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT1G66350 116 / 7e-28 GRAS RGL1 RGA-like 1 (.1) AT3G54220 114 / 5e-27 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G66770 113 / 1e-26 GRAS GRAS family transcription factor (.1) AT3G50650 112 / 3e-26 GRAS SCL7 GRAS family transcription factor (.1) AT5G41920 109 / 7e-26 GRAS GRAS family transcription factor (.1) AT3G03450 109 / 2e-25 GRAS RGL2 RGA-like 2 (.1) AT5G17490 108 / 3e-25 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G14920 107 / 7e-25 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020857 [exp] 845 / 0 AT4G08250 164 / 3e-45 GRAS family transcription factor (.1) Lus10008316 [exp] 167 / 7e-46 AT4G08250 444 / 5e-152 GRAS family transcription factor (.1) Lus10028056 [exp] 155 / 2e-42 AT4G08250 416 / 5e-143 GRAS family transcription factor (.1) Lus10033583 [exp] 119 / 9e-29 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 118 / 3e-28 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10040734 [exp] 114 / 1e-26 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10016496 [exp] 113 / 2e-26 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10006322 [exp] 107 / 7e-25 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10041740 [exp] 105 / 5e-24 AT5G66770 631 / 0.0 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G007100 [exp] 310 / 3e-101 AT4G08250 162 / 1e-44 GRAS family transcription factor (.1) Potri.005G190300 [exp] 284 / 8e-91 AT4G08250 138 / 7e-36 GRAS family transcription factor (.1) Potri.005G175300 [exp] 169 / 1e-46 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.002G086100 [exp] 167 / 4e-46 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.017G125200 [exp] 125 / 9e-31 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 121 / 2e-29 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.006G114200 [exp] 117 / 8e-28 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.008G131700 [exp] 113 / 1e-26 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.015G008300 [exp] 108 / 1e-25 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.012G020200 [exp] 108 / 1e-25 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10033517 pacid=23143387 polypeptide=Lus10033517 locus=Lus10033517.g ID=Lus10033517.BGIv1.0 annot-version=v1.0 ATGATGGAAATCGAAGAAGTAGTAGCCCATTTCCCCTTCAATCCATCAAGCTATGAACAACAATGCAGCAGCAGCATGGAAGAAGCCATCTCTTCTCTCG AAAATACCGAAGAACCATTCCATTTCAATAACTCAGACTGTTGGGAGATCCGCCTCATGGAGATCGAATCCGATCTCTTCATGGACTTGATCACCAGCTC GGTTTACCCACTAAATACTCCATTACCGGAGGAAGAACACGAGGAAAATATCAGCAGCAGCAGGCTGCCAAGTTTGTTACTGATGGCAGCTGAAGCCATT GATGCAGAGAACTGGCTGCTCTGTTCCTCTGTAATCGCTGAGCTCATGATCCACAACCAAAGCAACAGCCTTTTTTCTTCTACTTCTTGTTCTTTTCTGG AAAGGCTAACTGGGTTCTTCACTCAGGGATTGATCCAAAAGAACAAGATCAGCTTCGACGGTGTAGATCGAAATGATCGGCATTCTGCAGATTCCTCTGT TTCCTCCCCTGCATTCCACATTCTTCAGGAGTTGTCTCCGTACATCAAATTCGGCCATTTCGCGGCCAACCAAGCGATTCTCGAAGCCAGTTTCGAGAAC CGGAACATCCATGTGGTTGACTTTGACATCAACGAAGGTCTCCAGTGGCCCCCTCTAATGGCTGATCTCCTCGCGGCTGCAAGATCCTATCCGAATCAAA ATTCGCCGGCTTCCTTCAGACTAACAGCATTGATCCTACCGAATGCTAGTGCCACCGAATCCGCGGTGCACCAGACAGGGAGGAGGCTGAAAGAGTACGC GGATTCGATCAACTTAACGTTCGAATTCGACACCATTAACATAACCGATCTCGACACCATCCGAGTCGATCCGGGCCAAGCACTCATATCCAACTGTATG ATCCACCAACTCCACAGTCCAAACAGGAACTTCACACTGGTCAACACATTCCTAACATCAAGTGTCAGGCTTTCCCCAAGGCTGGTAGTGTTGGTGGAGG AAGAGCTCTTCAACTCCTCCAAGACCATCCCATCGATGCCGTTTGCGGACTTCTTCTGCGAGGCCATCGAGCATTACAGTGCGATTTCGGAGTCGTTGGC CGCAGATGGCCGGATCCACGGGAAGGGGATGGAGATGATGGAGAAGGATGTGCTGGGGAGAAGGGTAGTGGACAGTTTGGTTCAGTTTCCTTGTGGGGAA AGTGAGAAGTTTGGTTGGGAAAATGGGTTTGATTCATTGAAAGGTGAGTTCAAGGCTGTACCTTTTAGCACTACCAATGTGTCACAAGCTAACTACTTGG TGAGCTTGTTTTGTGGAGGGCATTGGGTTCAGCATGAGAGGTGTAGATTGGGTTTGTGTTGGAAGTCTAGGCCTTTGGCTACTGCTTCAATTTGGGTACC AAAAGGTCTCAAAGGAAAAGGAAATGCATAA
AA sequence Show only first row Show all	>Lus10033517 pacid=23143387 polypeptide=Lus10033517 locus=Lus10033517.g ID=Lus10033517.BGIv1.0 annot-version=v1.0 MMEIEEVVAHFPFNPSSYEQQCSSSMEEAISSLENTEEPFHFNNSDCWEIRLMEIESDLFMDLITSSVYPLNTPLPEEEHEENISSSRLPSLLLMAAEAI DAENWLLCSSVIAELMIHNQSNSLFSSTSCSFLERLTGFFTQGLIQKNKISFDGVDRNDRHSADSSVSSPAFHILQELSPYIKFGHFAANQAILEASFEN RNIHVVDFDINEGLQWPPLMADLLAAARSYPNQNSPASFRLTALILPNASATESAVHQTGRRLKEYADSINLTFEFDTINITDLDTIRVDPGQALISNCM IHQLHSPNRNFTLVNTFLTSSVRLSPRLVVLVEEELFNSSKTIPSMPFADFFCEAIEHYSAISESLAADGRIHGKGMEMMEKDVLGRRVVDSLVQFPCGE SEKFGWENGFDSLKGEFKAVPFSTTNVSQANYLVSLFCGGHWVQHERCRLGLCWKSRPLATASIWVPKGLKGKGNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08250	GRAS		GRAS family transcription fact...		Lus10033517 [exp]	0	1
					Lus10011769 [exp]	2.8	0.7472
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10025338 [exp]	3.2	0.7731
AT1G33340			ENTH/ANTH/VHS superfamily prot...		Lus10032674 [exp]	5.4	0.7739
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10015136 [exp]	10.5	0.7595
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10042395 [exp]	12.5	0.7258
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Lus10011710 [exp]	14.0	0.7254
AT5G59190			subtilase family protein (.1)		Lus10040251 [exp]	16.0	0.7161
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10010474 [exp]	19.2	0.6674
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012515 [exp]	21.0	0.6345
					Lus10004853 [exp]	22.2	0.7002

Compare expression of checked genes

Lus10033517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.