Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09810 461 / 3e-164 Nucleotide-sugar transporter family protein (.1) AT4G39390 460 / 7e-164 NST-K1, ATNST-KT1 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) AT1G34020 441 / 2e-156 Nucleotide-sugar transporter family protein (.1) AT5G42420 239 / 6e-77 Nucleotide-sugar transporter family protein (.1.2) AT1G21070 239 / 1e-76 Nucleotide-sugar transporter family protein (.1) AT1G76670 236 / 1e-75 Nucleotide-sugar transporter family protein (.1) AT2G30460 173 / 4e-51 Nucleotide/sugar transporter family protein (.1.2) AT1G06890 168 / 4e-49 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT2G28315 149 / 2e-42 Nucleotide/sugar transporter family protein (.1) AT5G55950 69 / 8e-13 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020837 [exp] 552 / 0 AT4G09810 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006810 [exp] 467 / 4e-166 AT4G09810 542 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10005790 [exp] 459 / 2e-163 AT4G09810 536 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10035824 [exp] 248 / 3e-80 AT1G21070 545 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10036606 [exp] 246 / 3e-79 AT1G21070 547 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10008596 [exp] 155 / 5e-44 AT2G30460 569 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Lus10021464 [exp] 151 / 7e-43 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041315 [exp] 150 / 2e-42 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10037397 [exp] 148 / 5e-41 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077900 [exp] 476 / 3e-170 AT4G39390 521 / 0.0 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.002G064700 [exp] 467 / 2e-166 AT4G09810 531 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G196500 [exp] 457 / 1e-162 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G086700 [exp] 450 / 5e-160 AT4G39390 457 / 1e-162 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.005G260300 [exp] 254 / 1e-82 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G000500 [exp] 249 / 1e-80 AT1G76670 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.019G128900 [exp] 178 / 4e-53 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.013G154800 [exp] 172 / 1e-50 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.009G011100 [exp] 154 / 4e-44 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.004G211900 [exp] 151 / 1e-42 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10033531 pacid=23143332 polypeptide=Lus10033531 locus=Lus10033531.g ID=Lus10033531.BGIv1.0 annot-version=v1.0 ATGTCTTCATCGAGTAAGACGGATAAGAAAGCGGCGGTTGATGCATCCGCATGGCTGTTCAACGTTGTGTCATCTGTTGTAATTATCATTGTGAATAAGG CCTTGATGGCTACCTATGGCTTCAGCTTCGCTACGACGTTAACCGGTCTGCATTTTGCGACGACAACCTTGTTAACATTGGTACTTAGGTGGATGAAATA TATTCAGCCATCTCACCTGCCAGTACCCGAGCTTCTTAAGTTCGTTTTGTTTGCAAACTTCTCTGTTGTTGGAATGAACGTGAGCTTGATGTGTAACTCT GTTGGATTTTATCAGATAGCAAAGTTGACAATGATCCCAGTTTCGTGTTTTCTGGAAGTAGTCTTGGACAGTATGCGATATTCTAGGGACACGAAGCTTA GCATCGCAGTAGTTCTCCTTGGTGTTGGGGTATGCACTGTCACAGACGTCAGTGTGAACACCAAGGGATTTCTAGCTGCTGCAGTTGCGGTCTGGAGCAC TGCCCTGCAACAATATTATGTACATTATCTTCAGCGGAGGTATTCTCTGAATTCGTTCAACTTGTTGGGTCACACTGCTCCAGCTCAAGCGGCATCTCTG CTGGTGGTTGGGCCCTTTCTGGATTACTGGTTGACAAATAAAAGGGTCGATGCATATCCTTATTCTTCGATTTCTGTGATCTTCATAGTCCTATCATGCA CAGTCGCCATAGGAACAAACCTGAGCCAGTTCATCTGCATCGGCAGGTTCACCGCAGTCTCGTTCCAAGTGCTGGGTCACATGAAGACGATTCTCGTGCT GGTCCTGGGATTCGTGTTCTTTGGTAAAGACGGCCTTAGTTTCCAGGTGGTTTTTGGCATGATCATTGCAGTAGCTGGGATGATTTGGTATGGCAATGCC TCCTCGAAGCCAGGTGGGAAGGAGCGCCGAAGCGTTCCAGCAAGCAGTGCCACCAAGTTCCAGAAACTGGAAACTGATGATGCTGATGAGAAAGTCTAG
AA sequence Show only first row Show all	>Lus10033531 pacid=23143332 polypeptide=Lus10033531 locus=Lus10033531.g ID=Lus10033531.BGIv1.0 annot-version=v1.0 MSSSSKTDKKAAVDASAWLFNVVSSVVIIIVNKALMATYGFSFATTLTGLHFATTTLLTLVLRWMKYIQPSHLPVPELLKFVLFANFSVVGMNVSLMCNS VGFYQIAKLTMIPVSCFLEVVLDSMRYSRDTKLSIAVVLLGVGVCTVTDVSVNTKGFLAAAVAVWSTALQQYYVHYLQRRYSLNSFNLLGHTAPAQAASL LVVGPFLDYWLTNKRVDAYPYSSISVIFIVLSCTVAIGTNLSQFICIGRFTAVSFQVLGHMKTILVLVLGFVFFGKDGLSFQVVFGMIIAVAGMIWYGNA SSKPGGKERRSVPASSATKFQKLETDDADEKV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09810			Nucleotide-sugar transporter f...		Lus10033531 [exp]	0	1
AT3G11320			Nucleotide-sugar transporter f...		Lus10040234 [exp]	18.7	0.7722
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10014657 [exp]	43.8	0.7570
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10015301 [exp]	110.0	0.6980
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10020053 [exp]	117.4	0.7152
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007317 [exp]	174.9	0.7001
AT4G04960			Concanavalin A-like lectin pro...		Lus10015313 [exp]	199.7	0.7004

Compare expression of checked genes

Lus10033531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.