Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01570 652 / 0 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT3G03450 652 / 0 GRAS RGL2 RGA-like 2 (.1) AT1G14920 649 / 0 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G66350 634 / 0 GRAS RGL1 RGA-like 1 (.1) AT5G17490 522 / 0 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G48150 235 / 2e-70 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT3G54220 232 / 7e-68 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT1G50600 229 / 5e-67 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 223 / 1e-66 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50420 212 / 6e-62 GRAS SCL-3, SCL3 scarecrow-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017626 [exp] 1033 / 0 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10028511 [exp] 465 / 1e-158 AT5G17490 527 / 0.0 RGA-like protein 3 (.1) Lus10017758 [exp] 376 / 8e-124 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10009133 [exp] 325 / 2e-109 AT1G14920 286 / 3e-95 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Lus10009134 [exp] 302 / 2e-97 AT2G01570 248 / 2e-95 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10041540 [exp] 303 / 3e-94 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 303 / 3e-93 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10036932 [exp] 244 / 1e-73 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10029592 [exp] 248 / 2e-73 AT1G63100 669 / 0.0 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125200 [exp] 819 / 0 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 807 / 0 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 711 / 0 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 709 / 0 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 291 / 7e-90 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.012G093900 [exp] 252 / 1e-76 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.015G091200 [exp] 250 / 1e-75 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.016G027800 [exp] 237 / 7e-72 AT1G14920 244 / 1e-75 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Potri.005G095100 [exp] 237 / 8e-71 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.005G186500 [exp] 238 / 2e-70 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family CL0063 [flax] [poplar] PF12041 [flax] [poplar] DELLA Transcriptional regulator DELLA protein N terminal
Representative CDS sequence Show only first row Show all	>Lus10033583 pacid=23143258 polypeptide=Lus10033583 locus=Lus10033583.g ID=Lus10033583.BGIv1.0 annot-version=v1.0 ATGAAAAGGAATCATCACCAATCCACCTGCAGCAGCTTCGGCGGCTTCAACAAGGAATCTGCCTCTGCATTAATGGCACCGCCGCCGTCCGCCGGGAAAG GGAAGCTATGGGAGGAAGACCAAGATGCGGGAGATATGGACGAGTTGCTGGCGGTTTTAGGTTACAAGGTCCGGTCGTCGGATATGGCGGAGGTCGCTCA GAAGCTCGAACAGCTAGAGATGGTCATGGGGACGGCGCAGGATGATGGGATTTCGCATCTCGGCTGCGACACCGTTCACTACAACCCTTCCGATCTCTCC GGATGGGTCGACTGTATGCTCTCCGAGCTCCACAACCCGCCCCTCGACCCGACTGCTGGATCTTCCTCGATCTCCTCCAGGGGTTTCTCTCAACAGTCCA CGGTATTCAGGGACGATTCCGAGTACGACCTCAGCGCAATCCCAGGCGTTGCCGCTTATCCACAAGCTGTATCGGAGATGAATATTGAAAGCAGCAGCAG CAGAAGAAGAAAGCGGATGAAATCTTCCAGTGGATCTTCGAACACAACGAATTCCTCGAGCTCGAACTCCTCCGCTCCTTCGTCTTCGTCTTCCTCGTCT CCTTCAGTGGCGTTAACAGTCGAATCATTAACTCGTCCAGTTGTGATAGTCGACTCGCAGGAAGCCGGAGTCCGACTCGTCCACACTCTATTAGCCTGTG CCGAGGCGGTTCAGCAAGAAAATGTGAAGCTCGCCGACGCACTCATCAAGCACACGGGGTTACTGGCGGCTTCTCAATCCGGCGCCATGAGGAAAGTCGC TACCTATTTCGCCGAAGCTCTAGCTCGCCGGATTTACAAGATCTATCCTCAAGACTGTCTGGATCCGTCCTACTCTGACGCCTTGGAGATGCACTTCTAC GAGACTTCCCCGTACCTGAAATTCGCTCATTTCACGGCGAATCAGGCGATTCTGGAGGCCTTTGCGACTTCCAGTCGTGTCCACGTCATCGATTTTGGGC TTAAACAAGGTATGCAGTGGCCGGCTCTTATGCAAGCTCTGGCACGACGCCCCGGAGGCTCGCCGGCTTTCCGATTGACCGGAATCGGACTTCCACAGCC AAACAACAACACCGACAGTTTACAGCAGGTGGGATGGAAATTGGCACAGTTTGCCGAGACGATCGGAGTGGAATTTGAATTCCGAGGGTTCGTCGCCAAC AGTTTGGCGGATCTGGAGCCGGAGATGCTTGACCTGCGCCCCTCCGATGTAGAGGCGGTGGCTGTCAACTCGGTGTTCGAACTCCATCGCCTCCTGGCCC GACCCGGCGGGATCGACAAAGTTCTGAAATCGATCAAGGCGATGAACCCGAAGATCGTGACGATGGTTGAGCAGGAAGCGAACCACAACGGGGCGGTATT CGTCGACAGGTTTACGGAGGCGTTGCATTACTACTCCACTCTCTTCGACTCGCTGGAAGGGTCATCGTCGGCGGCGGAGAACCATGTGATGTCGGAGCTG TATCTCGGTAGGCAGATCTGCAACGTGGTGGCGTGCGAAGGTGGTGACCGAGTTGAGCGGCACGAGACGTCGACTCAGTGGAGGAGTAGGATGGAATCGG CTGGGTTCGACTCGGTTCACCTGGGATCGAACGCGTACAAGCAGGCGAGTATGTTGCTGGCCTTGTTCGCCGGCGGCGATGGGTACCGAGTGGAGGAGAA GGACGGGTCGTTGATGCTTGGCTGGCACACTAGGCCGCTGATTGCGACGTCTGCGTGGAAACTCGGTTAA
AA sequence Show only first row Show all	>Lus10033583 pacid=23143258 polypeptide=Lus10033583 locus=Lus10033583.g ID=Lus10033583.BGIv1.0 annot-version=v1.0 MKRNHHQSTCSSFGGFNKESASALMAPPPSAGKGKLWEEDQDAGDMDELLAVLGYKVRSSDMAEVAQKLEQLEMVMGTAQDDGISHLGCDTVHYNPSDLS GWVDCMLSELHNPPLDPTAGSSSISSRGFSQQSTVFRDDSEYDLSAIPGVAAYPQAVSEMNIESSSSRRRKRMKSSSGSSNTTNSSSSNSSAPSSSSSSS PSVALTVESLTRPVVIVDSQEAGVRLVHTLLACAEAVQQENVKLADALIKHTGLLAASQSGAMRKVATYFAEALARRIYKIYPQDCLDPSYSDALEMHFY ETSPYLKFAHFTANQAILEAFATSSRVHVIDFGLKQGMQWPALMQALARRPGGSPAFRLTGIGLPQPNNNTDSLQQVGWKLAQFAETIGVEFEFRGFVAN SLADLEPEMLDLRPSDVEAVAVNSVFELHRLLARPGGIDKVLKSIKAMNPKIVTMVEQEANHNGAVFVDRFTEALHYYSTLFDSLEGSSSAAENHVMSEL YLGRQICNVVACEGGDRVERHETSTQWRSRMESAGFDSVHLGSNAYKQASMLLALFAGGDGYRVEEKDGSLMLGWHTRPLIATSAWKLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10033583 [exp]	0	1
AT1G69430			unknown protein		Lus10036796 [exp]	3.2	0.8773
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10006364 [exp]	3.7	0.8757
AT1G69330			RING/U-box superfamily protein...		Lus10004666 [exp]	6.0	0.8302
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10025516 [exp]	8.0	0.8217
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017437 [exp]	10.9	0.8121
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	14.9	0.8412
AT2G29900		PS2	Presenilin-2 (.1)		Lus10031966 [exp]	17.0	0.8205
AT5G43670			Sec23/Sec24 protein transport ...		Lus10022219 [exp]	20.8	0.8208
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	21.5	0.8401
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Lus10022947 [exp]	23.3	0.7945

Compare expression of checked genes

Lus10033583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.