Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20570 185 / 3e-54 GARP ATGLK1, GLK1, GPRI1 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) AT5G44190 156 / 2e-43 GARP ATGLK2, GPRI2, GLK2 GBF'S PRO-RICH REGION-INTERACTING FACTOR 2, GOLDEN2-like 2 (.1) AT4G18020 122 / 3e-30 GARP APRR2 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) AT5G58080 85 / 1e-17 GARP ARR18 response regulator 18 (.1) AT5G59570 82 / 2e-17 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1) AT3G16857 83 / 9e-17 GARP ARR1 response regulator 1 (.1.2) AT5G05090 78 / 5e-16 GARP Homeodomain-like superfamily protein (.1) AT3G10760 79 / 6e-16 GARP Homeodomain-like superfamily protein (.1) AT2G01760 79 / 6e-16 GARP ARR14 response regulator 14 (.1) AT4G16110 80 / 7e-16 GARP ARR2 response regulator 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017685 [exp] 233 / 1e-75 ND / Lus10039883 [exp] 191 / 5e-56 AT2G20570 241 / 7e-75 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10018649 [exp] 179 / 1e-51 AT2G20570 222 / 6e-68 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10011044 [exp] 116 / 3e-28 AT4G18020 366 / 3e-121 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10040109 [exp] 110 / 5e-26 AT4G18020 371 / 8e-123 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10003013 [exp] 109 / 1e-25 AT4G18020 376 / 6e-125 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10030938 [exp] 98 / 9e-22 AT4G18020 377 / 2e-124 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10036303 [exp] 83 / 8e-17 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10005340 [exp] 83 / 1e-16 AT2G25180 414 / 3e-137 response regulator 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G015800 [exp] 219 / 5e-67 AT2G20570 259 / 2e-82 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.007G136901 [exp] 212 / 3e-64 AT2G20570 256 / 5e-81 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.001G146200 [exp] 122 / 2e-30 AT4G18020 447 / 2e-152 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.003G087700 [exp] 108 / 3e-25 AT4G18020 389 / 1e-129 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.018G021300 [exp] 85 / 1e-17 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.006G262100 [exp] 85 / 2e-17 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.016G032600 [exp] 82 / 4e-17 AT3G10760 278 / 3e-92 Homeodomain-like superfamily protein (.1) Potri.018G111300 [exp] 82 / 1e-16 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.010G105600 [exp] 81 / 4e-16 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.006G034900 [exp] 79 / 5e-16 AT3G10760 271 / 8e-90 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033642 pacid=23143342 polypeptide=Lus10033642 locus=Lus10033642.g ID=Lus10033642.BGIv1.0 annot-version=v1.0 ATGTTAGCTGTGTCCTCGTCGGTGGACCATGAGATCTTCCAAGGGAAAGCCATCGACAACGCCGGCGAAGATGAAGTTGGGTCGTTCATGCCGGATTTCG ACCACGAGCTGTTGCTGGAAAGCATCGATTTCGACGAATTGTTCGTGGGGTTCAACGACGTCGTCGTTGATGGTAGTACTGCTGGGGATGTGTTGCTCCC GGATTTGGAGATGGTCGAGTTCTCCGGCGGTACTGCTGACGTCAGCGATGAGTCCGAGGTGGTCCAGAACTGTATGATGATGACGACGGCGAAAGAAGGG GAGACTGGGTCAACGGTCGAGTCTCCTTCTTCATCGTCGGTGGTGTTGAACCCGGAAAAGGGGAAGACGAAGTCGTCGGCTAGGGAGACTTCCTCGGGTT CCACTCATCGGAATGGTAGTAGCAAGAACGCTCATGGGAAGAGAAAAGTTAAGGTAGATTGGACGCCAGAGCTGCACAGGAGATTCGTGCAAGCAGTGGA GCAACTAGGAGTGGATAAGGCGGTTCCTTCAAGAATCTTGGAGCTTATGGGAATCGACTGCCTCACTCGACACAACGTCGCCAGCCACCTCCAAAAATAT AGGTCACACCGGAAGCATATACTAGCACGAGAGGCGGAGGCGGCGAGCTGGAGCCAACGCCGGCAAGTCTATACCGGAAAGAGAAACATTCACCGCCACC GTCACCAGCACCAGCCGTCATGGCATGCTCCGACGATGGGGTTTCCTCCTCCGGCGCCAGCTGCGGTGACTCCTTCTCCTCCTCCACCTCCCATGCATCC ACATGCTCACCATCTAGCAAGACCGTTACATGTATGGGGCCATCCGCCGTCAATTGACGGCCCCGTCCAATCTCACCATCCAATGCATATCTGGCCGCCT AATAAGCATCATCCTCCGCCGCCGGCCGATCCTAATTCTTTTTGGCATCACCACCACCAACGAAGATTCACCACACCGCCGGTTCCGGGCATCCCACAGC AGCCGTCACATCCGCCGCAACCCGGTCGGAGCCATCTACTCGACCACCAGCCGTCAAAAGAGAGCATAGACGCAGCCATAGGAGACGTTTTATCAAAGCC ATGGCTGCCGCTCCCTCTAGGCCCCCCCCTCCAGGCGCTTAACCCGCCGGCGGTCGACAGCGTAGTTGTGGAACTTCAACGCCACGGAATTCCCAATATA CCCCCGCCGGCGCCGCTGGCTCCGGTTATTTAA
AA sequence Show only first row Show all	>Lus10033642 pacid=23143342 polypeptide=Lus10033642 locus=Lus10033642.g ID=Lus10033642.BGIv1.0 annot-version=v1.0 MLAVSSSVDHEIFQGKAIDNAGEDEVGSFMPDFDHELLLESIDFDELFVGFNDVVVDGSTAGDVLLPDLEMVEFSGGTADVSDESEVVQNCMMMTTAKEG ETGSTVESPSSSSVVLNPEKGKTKSSARETSSGSTHRNGSSKNAHGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILELMGIDCLTRHNVASHLQKY RSHRKHILAREAEAASWSQRRQVYTGKRNIHRHRHQHQPSWHAPTMGFPPPAPAAVTPSPPPPPMHPHAHHLARPLHVWGHPPSIDGPVQSHHPMHIWPP NKHHPPPPADPNSFWHHHHQRRFTTPPVPGIPQQPSHPPQPGRSHLLDHQPSKESIDAAIGDVLSKPWLPLPLGPPLQALNPPAVDSVVVELQRHGIPNI PPPAPLAPVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10033642 [exp]	0	1
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10041806 [exp]	5.1	0.8719
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	5.6	0.8746
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10011358 [exp]	7.1	0.8684
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018501 [exp]	7.4	0.8449
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Lus10036705 [exp]	7.5	0.8513
AT3G21670			Major facilitator superfamily ...		Lus10030006 [exp]	9.5	0.8595
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10037598 [exp]	10.7	0.8589
AT1G09310			Protein of unknown function, D...		Lus10039866 [exp]	11.2	0.8467
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015538 [exp]	12.2	0.8465
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10022257 [exp]	13.9	0.8495

Compare expression of checked genes

Lus10033642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.