Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44210 89 / 7e-22 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT3G15210 88 / 1e-21 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G28360 85 / 1e-20 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT1G53170 84 / 1e-20 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT1G28370 81 / 3e-19 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT3G20310 81 / 8e-19 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT1G03800 79 / 5e-18 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT1G50640 76 / 4e-17 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1) AT2G33710 76 / 5e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT1G43160 76 / 5e-17 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039857 [exp] 101 / 1e-26 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10015415 [exp] 81 / 1e-18 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10035329 [exp] 80 / 7e-18 AT3G15210 115 / 8e-31 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10014054 [exp] 77 / 3e-17 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10031526 [exp] 77 / 3e-17 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10029987 [exp] 75 / 3e-17 AT3G15210 115 / 7e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10043182 [exp] 74 / 3e-16 AT3G20310 111 / 6e-30 ethylene response factor 7 (.1) Lus10037448 [exp] 76 / 5e-16 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10035076 [exp] 74 / 2e-15 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047600 [exp] 88 / 2e-21 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G056900 [exp] 86 / 2e-21 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.004G047500 [exp] 86 / 3e-21 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.007G138100 [exp] 84 / 5e-20 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.017G013700 [exp] 84 / 6e-20 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.001G397200 [exp] 82 / 3e-19 AT3G15210 95 / 1e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Potri.011G115600 [exp] 80 / 2e-18 AT3G15210 92 / 7e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Potri.011G057000 [exp] 79 / 6e-18 AT5G44210 94 / 1e-23 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.001G356100 [exp] 78 / 7e-18 AT1G50640 108 / 7e-29 ethylene responsive element binding factor 3 (.1) Potri.009G101900 [exp] 77 / 6e-17 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10033664 pacid=23143343 polypeptide=Lus10033664 locus=Lus10033664.g ID=Lus10033664.BGIv1.0 annot-version=v1.0 ATGTCGCCTCCGTCGAAGCAGAAAAAGAAGGCCTCGCCGTCCGCCGCTGAGCAGCGCTACAGGGGCGTGAGGAAGCGGCCGTGGGGCCGTTACGCAGCGG AGATCCGGGATCCGCGGAAGAAGACGCGCGTATGGCTGGGCACCTTCGACACAGCGGAAGAAGCCGCCATCGCTTACGACACGGCGGCGCGTGAATTTCG CGGCAACAAGGCCAAGACGAACTTCCCTTCCCCTGACGAGATGAGTCGCGGGAGCAGCTCTAGCCGTAGCGGCACGGCGGAGGAGGACCAGGAGGAGTCC TTCACACCGCCGCCGCCGCCAGAGACGGCGGCGGGAGTTTTGAAATCTGGAATTGCGGCGAGGTTTCCATTTCAGAATCCTGTCTGGCCGTTCGACGGTG TTTCCAGGCCGGATTTTACATATCCGGAGCAGAGAATAATCCCCACCAAATCCGCGTTTGAGTTCGGATTGGGGTCGGAAAGGAACTCGTCCGCTGTCGT GGAGGGTTGTAAGCCGGCGGGGAGGAAGGATCTAGATCTGGACTTGGAGCTTAGATTGGCCCCACCGTCAACTGCCTAA
AA sequence Show only first row Show all	>Lus10033664 pacid=23143343 polypeptide=Lus10033664 locus=Lus10033664.g ID=Lus10033664.BGIv1.0 annot-version=v1.0 MSPPSKQKKKASPSAAEQRYRGVRKRPWGRYAAEIRDPRKKTRVWLGTFDTAEEAAIAYDTAAREFRGNKAKTNFPSPDEMSRGSSSSRSGTAEEDQEES FTPPPPPETAAGVLKSGIAARFPFQNPVWPFDGVSRPDFTYPEQRIIPTKSAFEFGLGSERNSSAVVEGCKPAGRKDLDLDLELRLAPPSTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	0	1
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10036172 [exp]	1.0	0.9318
AT4G19460			UDP-Glycosyltransferase superf...		Lus10034760 [exp]	2.0	0.8907
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10009183 [exp]	4.0	0.8819
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Lus10039857 [exp]	4.4	0.8523
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Lus10033039 [exp]	6.5	0.8520
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10030861 [exp]	8.1	0.8787
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014689 [exp]	9.0	0.8416
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10042951 [exp]	10.2	0.8650
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10003557 [exp]	10.8	0.8858
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10014710 [exp]	15.1	0.8596

Compare expression of checked genes

Lus10033664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.