Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21440 174 / 2e-51 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G05100 147 / 1e-41 MYB ATMYB74 myb domain protein 74 (.1) AT4G28110 133 / 1e-36 MYB ATMYB41 myb domain protein 41 (.1) AT5G16770 134 / 2e-36 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G54230 124 / 9e-33 MYB ATMYB49 myb domain protein 49 (.1) AT4G17785 123 / 4e-32 MYB ATMYB39 myb domain protein 39 (.1) AT4G34990 120 / 1e-31 MYB ATMYB32 myb domain protein 32 (.1) AT3G02940 120 / 2e-31 MYB ATMYB107 myb domain protein 107 (.1) AT2G16720 116 / 2e-30 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT1G34670 117 / 9e-30 MYB ATMYB93 myb domain protein 93 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031609 [exp] 394 / 4e-138 AT4G21440 171 / 4e-51 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018525 [exp] 224 / 4e-72 AT4G21440 218 / 1e-69 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039743 [exp] 183 / 3e-56 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018418 [exp] 153 / 1e-43 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10020085 [exp] 152 / 3e-43 AT4G21440 315 / 2e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 147 / 2e-41 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10006740 [exp] 146 / 5e-40 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10036472 [exp] 115 / 2e-29 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10030378 [exp] 114 / 6e-29 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118200 [exp] 175 / 7e-52 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.013G148600 [exp] 161 / 2e-46 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.001G408700 [exp] 151 / 8e-43 AT4G21440 275 / 1e-90 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 150 / 2e-42 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G125900 [exp] 147 / 3e-41 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 140 / 3e-38 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G164900 [exp] 122 / 8e-32 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.005G112000 [exp] 117 / 4e-31 AT4G38620 277 / 5e-94 myb domain protein 4 (.1) Potri.004G174400 [exp] 118 / 5e-31 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.015G129100 [exp] 117 / 2e-30 AT4G22680 249 / 1e-82 myb domain protein 85 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033735 pacid=23143290 polypeptide=Lus10033735 locus=Lus10033735.g ID=Lus10033735.BGIv1.0 annot-version=v1.0 ATGGGGAGAGCACCTTGTTGCGAGAAGAACAATGGATCGTTGAAGAAAGGTCCATGGACTACTGAAGAAGATGATAAGCTCACTTCCTACGTTCAACTGC ATGGCCCTGGAAACTGGCGCAATCTCCCCCAAAATGCTGGTAAAAATGCTCTCTACCTACTCGTAGCCACATCCGTTTTCATCGTAAAAGTGTTTTCTAG ACGAATTACACGAGTGCATGTTCCCTTACAATTCGAGTTATTAGGAGAAGATGATCGAGGGGTTTTGACATCGACTCATGTTAGCCCTCGATTTCATCCA TGTGTTTGGGCTTTAACCCCGCGGTCCACTATAGCAGCCAGATTACCCGGAAGAACGGACAATGAGATAAAGAATTACTGGAACACTCATATTCGTAAAA AACTTTTACGTAATGGAATTGACCCGGTCACTCATGCTCCTCGACTTGACCTGCTCGATTTCTCAACCATACTAGGCTCGCTCAGCTACATCAACCCGGC TGTCTCTCTCCTTAGCCTCCTCACTGCCGGCCAGACACATCAGCTGTCGCAGCCGTACCTCAACCCAGAGCTCCTCCGCCTCGCTGCCAGCGCCTTGGGA TCCCAAATCCCGACGAACGTCCTAGCCGATCAAGCGACGTCGTCGCAGCTGCAAGAGAACGTTTACGGGTTTCAGGAGTTGAATAATAGTAATGATACGG GACGTAACTCGTCGTCCAATCTTCAGGAGGATAATTTGGTTTCAGCACCTGATGAATTTGGTAATTGGAATACGGTCCCTAAACTTTCTGATAATTGCCA AAGTTACTTCCAATCTACGACAGCGAGTGAGATTAGCAATGGGGGTAATGTTGGGAACGTTGGATCCTCCGTTATGTCGACGCCGTTATCGAGTCCAGGG AGGCTCGCGAACAGGGTTAACTGGAACTCTAATACGATGACGGATCATGAGTACAACAACCGCTTGTTTAAGGTTGAGATTCCAGAGAGTTTAGAGTCGT TTGATGATTTCATGTAA
AA sequence Show only first row Show all	>Lus10033735 pacid=23143290 polypeptide=Lus10033735 locus=Lus10033735.g ID=Lus10033735.BGIv1.0 annot-version=v1.0 MGRAPCCEKNNGSLKKGPWTTEEDDKLTSYVQLHGPGNWRNLPQNAGKNALYLLVATSVFIVKVFSRRITRVHVPLQFELLGEDDRGVLTSTHVSPRFHP CVWALTPRSTIAARLPGRTDNEIKNYWNTHIRKKLLRNGIDPVTHAPRLDLLDFSTILGSLSYINPAVSLLSLLTAGQTHQLSQPYLNPELLRLAASALG SQIPTNVLADQATSSQLQENVYGFQELNNSNDTGRNSSSNLQEDNLVSAPDEFGNWNTVPKLSDNCQSYFQSTTASEISNGGNVGNVGSSVMSTPLSSPG RLANRVNWNSNTMTDHEYNNRLFKVEIPESLESFDDFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033735 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	2.8	0.9515
AT5G05340			Peroxidase superfamily protein...		Lus10025255 [exp]	4.0	0.9419
AT5G39150			RmlC-like cupins superfamily p...		Lus10003116 [exp]	5.7	0.9329
AT5G10530			Concanavalin A-like lectin pro...		Lus10004279 [exp]	6.9	0.9290
AT5G05340			Peroxidase superfamily protein...		Lus10034207 [exp]	7.4	0.9317
					Lus10006615 [exp]	7.8	0.8909
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Lus10016625 [exp]	7.9	0.9338
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014108 [exp]	8.0	0.9272
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10004163 [exp]	14.3	0.9226
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	14.5	0.9240

Compare expression of checked genes

Lus10033735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.