Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16770 166 / 3e-48 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G23250 164 / 5e-48 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT5G65230 164 / 8e-48 MYB ATMYB53 myb domain protein 53 (.1) AT4G21440 164 / 2e-47 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT1G16490 162 / 2e-47 MYB ATMYB58 myb domain protein 58 (.1) AT4G28110 162 / 2e-47 MYB ATMYB41 myb domain protein 41 (.1) AT2G31180 161 / 2e-47 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT5G10280 163 / 3e-47 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT3G02940 163 / 3e-47 MYB ATMYB107 myb domain protein 107 (.1) AT1G79180 162 / 3e-47 MYB ATMYB63 myb domain protein 63 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018518 [exp] 209 / 2e-65 AT1G79180 167 / 6e-51 myb domain protein 63 (.1) Lus10033738 [exp] 177 / 2e-53 AT4G28110 184 / 2e-57 myb domain protein 41 (.1) Lus10031607 [exp] 176 / 5e-53 AT4G28110 182 / 2e-56 myb domain protein 41 (.1) Lus10039734 [exp] 174 / 1e-52 AT5G65230 183 / 2e-57 myb domain protein 53 (.1) Lus10039735 [exp] 169 / 1e-50 AT5G65230 176 / 5e-54 myb domain protein 53 (.1) Lus10042561 [exp] 167 / 2e-50 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2) Lus10022021 [exp] 163 / 1e-48 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10041888 [exp] 162 / 5e-48 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10003557 [exp] 164 / 9e-48 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118800 [exp] 196 / 7e-61 AT1G16490 174 / 2e-53 myb domain protein 58 (.1) Potri.019G118700 [exp] 194 / 5e-60 AT5G16770 170 / 4e-51 myb domain protein 9 (.1.2) Potri.013G149100 [exp] 190 / 2e-58 AT3G23250 176 / 4e-54 myb domain protein 15 (.1.2) Potri.013G149200 [exp] 178 / 6e-54 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118900 [exp] 173 / 4e-52 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.008G166700 [exp] 170 / 2e-50 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.005G224100 [exp] 169 / 2e-50 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.004G033100 [exp] 169 / 4e-49 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.007G093900 [exp] 167 / 1e-48 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.019G018200 [exp] 162 / 2e-48 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033737 pacid=23143498 polypeptide=Lus10033737 locus=Lus10033737.g ID=Lus10033737.BGIv1.0 annot-version=v1.0 ATGGTCCGAGCAGCTTTCTACGACGAAAAGGGAGTGAGGAAAGGCGCGTGGAGCAAAGAGGAGGACGACAAGTTGCGGAGCTACGTTACGAGGCACGGCC ATTGGAACTGGCGTGAGCTGCCCAAGTTCGCCGGACTTGACAGGTGCGGCAAGAGCTGCCGGCTACGGTGGATGAATTACCTCCGCCCTGATTTGAAGCA CGGCAATTTCAGTGCTGAAGAGGATGAGCTGATCGTTAAGCTCTTTGAAGAGCTTGGGACCAAGTGGTCAGCAATTGCTTCGAAGATGTCGGGGAGAACA GACAATGAAATAAAAAATTATTGGCACGCACATCTGAAGAAACGAGCAGCACGATGGACATCAAGTAAGATCCATAATGTCACCGAATCACCTTCGACAT CGTCGTCATCATCATCTCATCATCTACAGCATCCCGACGTCGAGAATAATCATGACCACAACTCGAGAACTGAAGAAATGGACATGGACATGGCTCATCA TCATCCTCCCGTCGAAACGACACTCCCTCCTTCAATATTGGAGAGCTCTCCAGTTTCACCACAACAGTACCCACTCTGTGAGTCGTTCAATTATCCAAGC ACATCATCAAATTTAAAACACGTCAACGATGTAGTCAGTGACGAATTCAAAATGGAGCCGCGTTGGGATTCTGCTCATAATTGGTATGAAACGACAGTCC CTCCTCCAATACCGGAGAGCTCCCCGTTTTCACCAGAACACTCTCTTTATAAATCATTCAATCACTTGAGCACATCGTTTGATAAAGATGACTTAAATCA CGCAAATCTCATTATCAATGACGGATTCGAGATGGAGCCGTATGATTCCCATAATTGGTGTGAAACGGTACAAAGGGAACAAGTTAGTAATGATGCCAAT TATAGTATTAGTGGAGGAGATTTCTGGACAGAGCCATTTGTTGTGATGGATGATGGTGGTGGAGACATGAGTTATAAAAGTTGGGGGTGTGTGGGAGATG AAACGACGACGTTGATGTTTGACGATGATTTGGAATCTTTGATGTATAGTGTGATGCGAGAGCTTCCGGATACTTCATTTTGA
AA sequence Show only first row Show all	>Lus10033737 pacid=23143498 polypeptide=Lus10033737 locus=Lus10033737.g ID=Lus10033737.BGIv1.0 annot-version=v1.0 MVRAAFYDEKGVRKGAWSKEEDDKLRSYVTRHGHWNWRELPKFAGLDRCGKSCRLRWMNYLRPDLKHGNFSAEEDELIVKLFEELGTKWSAIASKMSGRT DNEIKNYWHAHLKKRAARWTSSKIHNVTESPSTSSSSSSHHLQHPDVENNHDHNSRTEEMDMDMAHHHPPVETTLPPSILESSPVSPQQYPLCESFNYPS TSSNLKHVNDVVSDEFKMEPRWDSAHNWYETTVPPPIPESSPFSPEHSLYKSFNHLSTSFDKDDLNHANLIINDGFEMEPYDSHNWCETVQREQVSNDAN YSISGGDFWTEPFVVMDDGGGDMSYKSWGCVGDETTTLMFDDDLESLMYSVMRELPDTSF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033737 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10027146 [exp]	1.4	0.8618
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10017587 [exp]	1.4	0.9238
					Lus10029758 [exp]	3.0	0.8529
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Lus10034238 [exp]	4.0	0.8288
					Lus10015849 [exp]	4.4	0.7324
AT1G74400			Tetratricopeptide repeat (TPR)...		Lus10002903 [exp]	6.0	0.7637
AT5G05340			Peroxidase superfamily protein...		Lus10029065 [exp]	8.1	0.8176
					Lus10005269 [exp]	9.4	0.6519
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10001044 [exp]	11.6	0.7741
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032435 [exp]	12.3	0.7823

Compare expression of checked genes

Lus10033737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.