Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28110 179 / 2e-55 MYB ATMYB41 myb domain protein 41 (.1) AT1G34670 177 / 2e-53 MYB ATMYB93 myb domain protein 93 (.1) AT5G65230 175 / 3e-53 MYB ATMYB53 myb domain protein 53 (.1) AT4G21440 175 / 8e-53 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT3G02940 172 / 4e-52 MYB ATMYB107 myb domain protein 107 (.1) AT5G15310 172 / 6e-52 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT5G16770 172 / 7e-52 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G60890 169 / 4e-51 MYB AtMYB34, MYB34, ATR1 ALTERED TRYPTOPHAN REGULATION 1, myb domain protein 34 (.1) AT3G01140 170 / 1e-50 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT4G05100 167 / 3e-50 MYB ATMYB74 myb domain protein 74 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031607 [exp] 308 / 4e-106 AT4G28110 182 / 2e-56 myb domain protein 41 (.1) Lus10039734 [exp] 224 / 6e-74 AT5G65230 183 / 2e-57 myb domain protein 53 (.1) Lus10039735 [exp] 222 / 2e-72 AT5G65230 176 / 5e-54 myb domain protein 53 (.1) Lus10039771 [exp] 180 / 3e-56 AT1G34670 184 / 5e-57 myb domain protein 93 (.1) Lus10018547 [exp] 176 / 2e-54 AT4G21440 179 / 2e-54 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018546 [exp] 175 / 2e-54 AT1G34670 176 / 2e-53 myb domain protein 93 (.1) Lus10022021 [exp] 174 / 2e-54 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10039772 [exp] 174 / 2e-53 AT4G21440 175 / 5e-53 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018545 [exp] 173 / 4e-53 AT1G34670 159 / 1e-47 myb domain protein 93 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G149200 [exp] 206 / 3e-66 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118900 [exp] 196 / 3e-62 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.013G149100 [exp] 186 / 4e-58 AT3G23250 176 / 4e-54 myb domain protein 15 (.1.2) Potri.019G118800 [exp] 181 / 4e-56 AT1G16490 174 / 2e-53 myb domain protein 58 (.1) Potri.019G118700 [exp] 179 / 1e-55 AT5G16770 170 / 4e-51 myb domain protein 9 (.1.2) Potri.007G093900 [exp] 180 / 8e-55 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G164900 [exp] 178 / 4e-54 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.011G125900 [exp] 178 / 4e-54 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G074500 [exp] 177 / 5e-54 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.019G118200 [exp] 176 / 4e-53 AT4G05100 278 / 7e-92 myb domain protein 74 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033738 pacid=23143457 polypeptide=Lus10033738 locus=Lus10033738.g ID=Lus10033738.BGIv1.0 annot-version=v1.0 ATGGTTCGAACTCCTTCCTGCGACGAGAACGGAATGAGGAAAGGAACTTGGACTGCCGAGGAAGACAGGAAGCTTATTGCCTACATCACTCGCTACGGCT GCTGGAATTGGCGCCAATTGCCCAAGTTCGCAGGTTTGAAGAGATGCGGGAAGAGTTGTAGGTTGAGATGGATGAATTATCTAAGACCGGATCTCAAACG AGGGAATTACAGTCTCGAAGAGGAAGAAACCATCCTTCGTCTCCGTGCCGCTCTTGGAAACAAATGGTCAGTGATAGCGACACATCTGCCCGGGAGGAGT GACAACGAGATAAAAAACCACTGGCATAGCAGTCTCAAGAAGCGCGCTGTCGGGAAGTCACAAAGTCCGGCTAGTAGTAGCAGTACTACTCAATCTAGCG AGTATAGGGAAGTGAAAGAAGAGGGAATTGACAAGCCCCAAATGGAAATTCCTGATGGTGTACCGGTATTGGAGAGCAGTATTTCGTGGATTTCCACTCT ACCGCCGCCTCAGAGTGATGCCACGTCCTCCTCTTCTTCTTTGTCTCCATCCTTGTTCTCATTCGACAGTGTGGCTACCGAGGCTGGCTCGACAGCCTCT GGAGCAGGACTCTCGGATGTGCTATCCGATCTGAGCTCCTTCGTTGATCTGTGGGAGACCAACGAGCCGTACAATAACTGGCCGGAGCCGGAACCAATGG TGACCACGGATAACTATTGGTACATGCCTAGTGAGGTTTACGAGAGTTTGGCCGTCGAGGAGGAGCCACAATTCCCTTTGTTTTATTGA
AA sequence Show only first row Show all	>Lus10033738 pacid=23143457 polypeptide=Lus10033738 locus=Lus10033738.g ID=Lus10033738.BGIv1.0 annot-version=v1.0 MVRTPSCDENGMRKGTWTAEEDRKLIAYITRYGCWNWRQLPKFAGLKRCGKSCRLRWMNYLRPDLKRGNYSLEEEETILRLRAALGNKWSVIATHLPGRS DNEIKNHWHSSLKKRAVGKSQSPASSSSTTQSSEYREVKEEGIDKPQMEIPDGVPVLESSISWISTLPPPQSDATSSSSSLSPSLFSFDSVATEAGSTAS GAGLSDVLSDLSSFVDLWETNEPYNNWPEPEPMVTTDNYWYMPSEVYESLAVEEEPQFPLFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	0	1
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	1.4	0.9957
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	2.8	0.9916
AT5G60330			unknown protein		Lus10018274 [exp]	3.5	0.9884
					Lus10019410 [exp]	4.5	0.9776
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10005809 [exp]	4.8	0.9641
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	4.9	0.9884
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	5.0	0.9861
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008935 [exp]	6.7	0.9783
AT4G16195			Plant self-incompatibility pro...		Lus10008107 [exp]	6.9	0.9637
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	7.0	0.9817

Compare expression of checked genes

Lus10033738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.