Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54870 365 / 7e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G05260 356 / 6e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G13180 108 / 8e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G05530 104 / 2e-26 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT1G24360 104 / 1e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G63380 101 / 5e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G04000 100 / 1e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 100 / 2e-24 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03980 99 / 5e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 99 / 9e-24 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021931 [exp] 476 / 5e-171 AT3G05260 364 / 3e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029937 [exp] 379 / 6e-133 AT1G54870 503 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004471 [exp] 376 / 6e-131 AT1G54870 501 / 5e-180 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 112 / 2e-28 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 109 / 7e-28 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001430 [exp] 108 / 8e-28 AT4G05530 369 / 2e-130 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10020019 [exp] 106 / 6e-27 AT4G05530 395 / 5e-141 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10029369 [exp] 105 / 2e-26 AT3G51680 226 / 3e-73 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019777 [exp] 105 / 3e-26 AT1G52340 391 / 3e-138 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G023900 [exp] 388 / 2e-136 AT1G54870 493 / 1e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G149201 [exp] 368 / 1e-128 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G092400 [exp] 282 / 6e-96 AT1G54870 301 / 3e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G050700 [exp] 188 / 2e-59 AT1G54870 182 / 5e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G023900 [exp] 172 / 2e-52 AT1G54870 172 / 1e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 115 / 6e-30 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 115 / 7e-30 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G033500 [exp] 104 / 3e-26 AT3G03980 321 / 3e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 101 / 4e-25 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G125900 [exp] 101 / 7e-25 AT3G12800 421 / 9e-150 short-chain dehydrogenase-reductase B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10033745 pacid=23143537 polypeptide=Lus10033745 locus=Lus10033745.g ID=Lus10033745.BGIv1.0 annot-version=v1.0 ATGGACTCAGCTGGGAGCAGCAGCATCACAGCCATGGGGCATCGGTTCCCCGCACAGCATCAGGACGAGCATCCCGGGAAAGAATACCTCATGAACCCTC TTCCTCAGCCGCTCAACCCTAAACCCTACACCGCCTCTAACAAGCTCCTAGGGAAGGTGGCTCTAGTGACGGGAGGAGACTCGGGCATCGGGCGATCGGT CTGCTTACACTTTGCGATGGAAGGAGCCACCGTGGGATTCACCTACGTCGAAGGGATCGAGGATGTCGACAAGGACGAAACCATCAAACTCATCAAGGAA TGCATGACGTCCCCTTCAGCTAAAGACCCCATAGCCATATCTGCCGATTTGGGTCACGAATCGGAGTGCCAGAGGGTTGTCGACGAGTTTGTTAAGGAGT ACGGGACCATCGACATCCTTGTGAACAATGCGGCGGTTCAATACTATACCACCTCGATCGACGACATCACTGAAGCCAGGTTAGAGAAGACATTCCGAAC CAACATGTTTTCCTACTTCTTCATGTCGAAGCTAGCATTGAAGCACATGGAAAGAGGGAGCTGCATCATCAACACAACATCCGTCATAGCGTACGTCGGT AACAAAGAGCTGATGGATTACAGTGCCACGAAAGGCGCGATCGTAACGTTCACGAGGAGCTTGGCGTTGAGCCTTGTCGAGAGAGGGATCCGGGTCAATG CAGTTGCGCCCGGACCCATTTGGACTCCGTTCCAGGTTTCATCTTTCCCTGCGGAGACGGTGAGCACTTTAGGTGCTAAAGTGCCGATGGATAGAGCCGG ACAGCCTTACGAGGTCGCCCCTTCTTTTGTGTTCTTGGCCTGTGAGGATATGTCTTCTTATTTCACTGGCCAAGTCATGCATCCTAATGGAGGATGGATT GTCAACACTTGA
AA sequence Show only first row Show all	>Lus10033745 pacid=23143537 polypeptide=Lus10033745 locus=Lus10033745.g ID=Lus10033745.BGIv1.0 annot-version=v1.0 MDSAGSSSITAMGHRFPAQHQDEHPGKEYLMNPLPQPLNPKPYTASNKLLGKVALVTGGDSGIGRSVCLHFAMEGATVGFTYVEGIEDVDKDETIKLIKE CMTSPSAKDPIAISADLGHESECQRVVDEFVKEYGTIDILVNNAAVQYYTTSIDDITEARLEKTFRTNMFSYFFMSKLALKHMERGSCIINTTSVIAYVG NKELMDYSATKGAIVTFTRSLALSLVERGIRVNAVAPGPIWTPFQVSSFPAETVSTLGAKVPMDRAGQPYEVAPSFVFLACEDMSSYFTGQVMHPNGGWI VNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10033745 [exp]	0	1
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	1.4	0.9142
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10009168 [exp]	2.2	0.8764
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10041888 [exp]	2.4	0.8944
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	3.5	0.8789
AT3G62080			SNF7 family protein (.1.2)		Lus10009262 [exp]	5.7	0.8176
AT1G33970			P-loop containing nucleoside t...		Lus10009482 [exp]	5.7	0.8683
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10013615 [exp]	6.5	0.8757
AT4G03090			sequence-specific DNA binding;...		Lus10006937 [exp]	6.6	0.8554
AT1G78210			alpha/beta-Hydrolases superfam...		Lus10020926 [exp]	7.1	0.8288
AT5G26040		HDA2	histone deacetylase 2 (.1.2)		Lus10024990 [exp]	9.2	0.8541

Compare expression of checked genes

Lus10033745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.