Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58360 523 / 0 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G10010 522 / 0 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G49630 503 / 9e-176 AAP6 amino acid permease 6 (.1) AT5G09220 494 / 5e-172 AAP2 amino acid permease 2 (.1) AT5G63850 470 / 4e-163 AAP4 amino acid permease 4 (.1) AT1G44100 466 / 2e-161 AAP5 amino acid permease 5 (.1) AT1G77380 462 / 1e-159 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G23810 355 / 5e-118 AAP7 amino acid permease 7 (.1.2) AT5G40780 172 / 3e-48 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 160 / 1e-43 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012444 [exp] 959 / 0 AT1G10010 535 / 0.0 amino acid permease 8 (.1) Lus10035663 [exp] 633 / 0 AT1G10010 569 / 0.0 amino acid permease 8 (.1) Lus10037248 [exp] 632 / 0 AT1G10010 563 / 0.0 amino acid permease 8 (.1) Lus10033760 [exp] 582 / 0 AT1G10010 506 / 5e-178 amino acid permease 8 (.1) Lus10007235 [exp] 506 / 9e-177 AT5G49630 720 / 0.0 amino acid permease 6 (.1) Lus10029707 [exp] 494 / 6e-172 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10028236 [exp] 490 / 2e-170 AT5G49630 687 / 0.0 amino acid permease 6 (.1) Lus10029703 [exp] 464 / 1e-160 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10018852 [exp] 461 / 2e-159 AT1G77380 702 / 0.0 amino acid permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G085000 [exp] 550 / 0 AT1G58360 546 / 0.0 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) Potri.002G112100 [exp] 515 / 1e-180 AT5G49630 691 / 0.0 amino acid permease 6 (.1) Potri.005G068900 [exp] 494 / 4e-172 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 489 / 5e-170 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 472 / 5e-163 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G079500 [exp] 469 / 1e-162 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 461 / 1e-157 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 456 / 4e-157 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.006G236000 [exp] 455 / 1e-156 AT1G10010 580 / 0.0 amino acid permease 8 (.1) Potri.005G181500 [exp] 454 / 2e-156 AT1G77380 728 / 0.0 amino acid permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10033759 pacid=23172794 polypeptide=Lus10033759 locus=Lus10033759.g ID=Lus10033759.BGIv1.0 annot-version=v1.0 ATGGGTTTCGAGAAGTCAATTGAGGAACAAGGAAACTATTCTCCTTCTTCCATAGCACCACCAGCAGCTGCTGATACTGATGATGATGGTCGCCTCAAAC GAACCGGAACGTTAATGACGGCAAGTGCACATATAATAACATCAGTTATTGGGTCAGGAGTACTGTCTCTGGCGTGGGCCACGGCCCAATTGGGTTGGAT TGCTGGGCCCTTTGCTCTTCTAGTCTTCGCTCTCATTACCCTATACACAGCGGCTCTCCTTTGCGACTGTTACAGGTTTCCGGGCCCAAAACTGGGATCC CGAAACTACAGCTACACTGCTGCTGTCAAATCCCATTTAGGTGGAATCAAGTACAAATTCTGTGGGGTGGCTCAGTTCGCCTATCTTCTAGGGACAGCCA TTGGATACACCATAATCACTCCTATCAGCATGGCGACAATCGAGAAATCATTCTGCATTCACAGTAAGGGCCTAAGTGGTGAGGAATTGGAAAAAGCAAC ATCATTAGAATCAGGAGGAGTCGCAGGGTGCAAGACGGGGATCAACAAGTATGTGATGGTGTTTGGGATAATAGAGGTCCTCCTTAGCCAACTCCCTAAC TTCCACAAGCTGGCATTCATCTCCGTCATAGCTGCTCTAATGTCGTTTGCGTACGCCACAATCGGGCTATCCCTCTGCATTGCTCTAATTGCAGAGAAAG GTTTGCACCCGGAGATGGGGTTGACCGGAGTAAGGATCGGGAAAGACGTGAGTGCTTCCCAGAAAGTGTTCAACTCTCTGCAGGCTATTGGGGACATTGC TTTTGCATATTCCTACACTCCTCTGCTCCTTGAAATCCAGGACACATTGAAAGCGAGTAAAGATGAGAATGAGGTGATGAGGAAGGCATCCATAATAGGG GTGTCCATAACAACATTGTTCTATACATTGTGTGGAGTGGTGGGCTACGCTGCATTTGGGAACAAGGCACCCAATGATTTGCTCACTGGCTTTCCTACCT TCAAACCCTTTTGGATCGTCGACATTGCCAACCTCTGCGTCGTTATTCATCTCATTGGAGCTTATCAGGTGTTCATACAGCCAACATTCCGGGTGGTGGA AGATTACTGCAATGAGAAATGGCCGGAGCTCGAGTTCCTGACGAAAGAACATGAATTGAATCTCCTACCGTGTAGCAGATCGAGTGGGCGGTTTGTGGTC CGAATTAACGTGTTCAGGCTGGTATGGAGGAGCATATACGTGATGGGGACGTGCGTGGTGGGGATGGTATTCCCATTCTTCAACAGCGTGTTGGGGCTGC TGGGAGCGTTGGCGTTTTGGCCGCTGACGCTGTATTTCCCGACGGAGATGCATAAGAAGCAAGTGAGGATGAAGAAGTGGAGCTGGAGGTGGAGTTGGGT GAATGCTTTGAGTTTGATTTGCTTGCTTGTTTCCATTGCTGTTGCTGTTGGCTCTGTTGAAGGGATCCTGCTCTCCCTCAGGAAGTTCAAGCCTTTCCAC TTCCAGACTTGA
AA sequence Show only first row Show all	>Lus10033759 pacid=23172794 polypeptide=Lus10033759 locus=Lus10033759.g ID=Lus10033759.BGIv1.0 annot-version=v1.0 MGFEKSIEEQGNYSPSSIAPPAAADTDDDGRLKRTGTLMTASAHIITSVIGSGVLSLAWATAQLGWIAGPFALLVFALITLYTAALLCDCYRFPGPKLGS RNYSYTAAVKSHLGGIKYKFCGVAQFAYLLGTAIGYTIITPISMATIEKSFCIHSKGLSGEELEKATSLESGGVAGCKTGINKYVMVFGIIEVLLSQLPN FHKLAFISVIAALMSFAYATIGLSLCIALIAEKGLHPEMGLTGVRIGKDVSASQKVFNSLQAIGDIAFAYSYTPLLLEIQDTLKASKDENEVMRKASIIG VSITTLFYTLCGVVGYAAFGNKAPNDLLTGFPTFKPFWIVDIANLCVVIHLIGAYQVFIQPTFRVVEDYCNEKWPELEFLTKEHELNLLPCSRSSGRFVV RINVFRLVWRSIYVMGTCVVGMVFPFFNSVLGLLGALAFWPLTLYFPTEMHKKQVRMKKWSWRWSWVNALSLICLLVSIAVAVGSVEGILLSLRKFKPFH FQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58360		NAT2, AAP1	NEUTRAL AMINO ACID TRANSPORTER...		Lus10033759 [exp]	0	1
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Lus10019155 [exp]	1.0	0.8801
					Lus10022875 [exp]	8.7	0.8213
AT5G15080			Protein kinase superfamily pro...		Lus10038087 [exp]	9.2	0.8313
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026827 [exp]	10.5	0.7540
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10005956 [exp]	14.6	0.8242
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10020750 [exp]	14.7	0.7600
AT5G02920			F-box/RNI-like superfamily pro...		Lus10037289 [exp]	19.7	0.7522
					Lus10024951 [exp]	19.8	0.7561
AT2G18196			Heavy metal transport/detoxifi...		Lus10033250 [exp]	21.5	0.7847
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10012080 [exp]	26.0	0.8023

Compare expression of checked genes

Lus10033759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.