Plant FIBer expression Database

Lus10033760 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10010 506 / 3e-178 AAP8, ATAAP8 amino acid permease 8 (.1)
AT1G58360 491 / 4e-172 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1)
AT5G49630 484 / 4e-169 AAP6 amino acid permease 6 (.1)
AT5G09220 469 / 4e-163 AAP2 amino acid permease 2 (.1)
AT1G77380 460 / 6e-160 AAP3, ATAAP3 amino acid permease 3 (.1)
AT5G63850 453 / 3e-157 AAP4 amino acid permease 4 (.1)
AT1G44100 449 / 2e-155 AAP5 amino acid permease 5 (.1)
AT5G23810 380 / 1e-128 AAP7 amino acid permease 7 (.1.2)
AT5G40780 154 / 6e-42 LHT1, LTH1 lysine histidine transporter 1 (.1.2)
AT1G24400 153 / 1e-41 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035663
[exp]
730 / 0 AT1G10010 569 / 0.0 amino acid permease 8 (.1)
Lus10037248
[exp]
728 / 0 AT1G10010 563 / 0.0 amino acid permease 8 (.1)
Lus10033759
[exp]
582 / 0 AT1G58360 533 / 0.0 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1)
Lus10012444
[exp]
582 / 0 AT1G10010 535 / 0.0 amino acid permease 8 (.1)
Lus10007235
[exp]
488 / 1e-170 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
Lus10028236
[exp]
474 / 4e-165 AT5G49630 687 / 0.0 amino acid permease 6 (.1)
Lus10029707
[exp]
466 / 4e-162 AT1G77380 759 / 0.0 amino acid permease 3 (.1)
Lus10029703
[exp]
461 / 2e-160 AT1G44100 688 / 0.0 amino acid permease 5 (.1)
Lus10018852
[exp]
461 / 5e-160 AT1G77380 702 / 0.0 amino acid permease 3 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G085000
[exp]
539 / 0 AT1G58360 546 / 0.0 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1)
Potri.002G112100
[exp]
509 / 3e-179 AT5G49630 691 / 0.0 amino acid permease 6 (.1)
Potri.005G068900
[exp]
491 / 6e-172 AT5G09220 799 / 0.0 amino acid permease 2 (.1)
Potri.007G100100
[exp]
489 / 5e-171 AT5G09220 768 / 0.0 amino acid permease 2 (.1)
Potri.009G133600
[exp]
472 / 4e-164 AT5G09220 711 / 0.0 amino acid permease 2 (.1)
Potri.002G079500
[exp]
456 / 5e-158 AT1G77380 766 / 0.0 amino acid permease 3 (.1)
Potri.001G470200
[exp]
452 / 4e-157 AT5G09220 543 / 0.0 amino acid permease 2 (.1)
Potri.011G167200
[exp]
452 / 6e-157 AT5G23810 518 / 0.0 amino acid permease 7 (.1.2)
Potri.006G236000
[exp]
452 / 2e-156 AT1G10010 580 / 0.0 amino acid permease 8 (.1)
Potri.001G470000
[exp]
444 / 1e-153 AT5G23810 570 / 0.0 amino acid permease 7 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0062 APC PF01490 Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence
>Lus10033760 pacid=23172747 polypeptide=Lus10033760 locus=Lus10033760.g ID=Lus10033760.BGIv1.0 annot-version=v1.0
ATGGGTGAAGGAACAATGATGACAGCAAGTGCGCACATAATAACATCAGTGATAGGATCAGGGGTGCTGTCGTTGGCATGGGCCACAGCCCAATTGGGCT
GGATTGCTGGCCCATTTGTGCTCTTTGTATTTGCTTCAATTACTTGGTACACCGCTTGTATGCTTTGTGACTCTTACAGATGCCCTGGGCCCAATGTCGG
CACCCGAACTTACACTTACAGCGGCGCTGTCAAGGCCCACTTAGGGGGGCTCAGGTCCAAATTTTGTGGAGTAGTTCAGTTTGTATATCTCCTCGGAACT
TGTATTGGATACACCATCGCTACACCTATTAGTATGGGTGCGATCCAGAGATCGAATTGCCCCTACAACAAGAAGGGACACGGAGCACAGTGTCAAGCGT
CTAACAACAAGTTTGTGATCATCTTTGGGATGATTGAAATACTTCTAAGCCAGCTCCCCGACTTCCATAACCTTGCCTTCATCTCCGTGATTGCCGCCGT
TATGTCCTTCGCTTACTCCGTCATCAGCCTCGGTCTCTGTGTCGCTATCATCATAAAAAATCATGGTCATGCGGACACAGGGATGACAGGAGTGCGGGTC
GGAGAAGGAGGCCTCACAGAATCGATGAAGCTGTTCGACGTTTTACAGGCCGTCGGGGACATAGCATTTGCCTATAGTTATGCACCAATCCTTCTCGAAA
TCGAGGACACGTTGAAATCAAGTCCTCCGGAGAATGAGGTGATGAAGAAGGCATCGGTGACCGGAATAGCAGTGACGACGGCGTTCTATGGGTTATGTGG
GGTGCTCGGTTATGCCGCGTTTGGTAATGAAGCTCCTGGAAACTTGCTGACCGGTTTCGGTTCCTATGACCCATTTTGGCTCGTCGACATTGCTAACCTC
TTTGTTGTTATCCACCTCATTGGCGCTTATCAGGTACTGATTCAGCCAACATTCCAAATAGTGGAAGAATGGTGCAAACAAAAATGGTCAAAAAATAGCT
TCCTGCAAAAAGAGTATCCGGTGAAAATTCCGGTGATCGGAAAGTTGAGACTCAACGGGTTCAGGCTGATATGGAGAACACTGTACGTGATGGGTACGTG
TGTGGTGGGGATGGTGTTCCCGTACTTCAACAGCGTGCTGGGGTTGCTTGGTGCCTTAGGATTTTGGCCATTATCGATCTACTTCCCGATTGAGATGTAC
AAAAAACAGGCCAAAGTGGAGCGGTTCAGCTCTACCTGGATAGGGGTCACCATCTTAAGTGGACTCTGCTTCATTGTTTCCATACTCTGCACCGTTGGAT
CTATGGATGGCATCATTACTTCCCTTTGA
AA sequence
>Lus10033760 pacid=23172747 polypeptide=Lus10033760 locus=Lus10033760.g ID=Lus10033760.BGIv1.0 annot-version=v1.0
MGEGTMMTASAHIITSVIGSGVLSLAWATAQLGWIAGPFVLFVFASITWYTACMLCDSYRCPGPNVGTRTYTYSGAVKAHLGGLRSKFCGVVQFVYLLGT
CIGYTIATPISMGAIQRSNCPYNKKGHGAQCQASNNKFVIIFGMIEILLSQLPDFHNLAFISVIAAVMSFAYSVISLGLCVAIIIKNHGHADTGMTGVRV
GEGGLTESMKLFDVLQAVGDIAFAYSYAPILLEIEDTLKSSPPENEVMKKASVTGIAVTTAFYGLCGVLGYAAFGNEAPGNLLTGFGSYDPFWLVDIANL
FVVIHLIGAYQVLIQPTFQIVEEWCKQKWSKNSFLQKEYPVKIPVIGKLRLNGFRLIWRTLYVMGTCVVGMVFPYFNSVLGLLGALGFWPLSIYFPIEMY
KKQAKVERFSSTWIGVTILSGLCFIVSILCTVGSMDGIITSL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Download tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G10010 AAP8, ATAAP8 amino acid permease 8 (.1) Lus10033760
[exp]
0 1

Lus10033760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.