Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15340 635 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 415 / 4e-132 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 373 / 2e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 367 / 3e-115 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 341 / 7e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 338 / 2e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 337 / 6e-104 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 336 / 1e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 334 / 3e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 335 / 6e-102 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014653 [exp] 1630 / 0 AT5G15340 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 395 / 7e-125 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 394 / 4e-124 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 382 / 5e-121 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010909 [exp] 367 / 9e-115 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 366 / 2e-114 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 361 / 6e-113 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023592 [exp] 355 / 1e-110 AT1G74630 840 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 354 / 4e-110 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G087600 [exp] 773 / 0 AT5G15340 754 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 402 / 3e-127 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 400 / 2e-126 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G191200 [exp] 385 / 2e-122 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 387 / 1e-121 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 370 / 2e-114 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 364 / 2e-114 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 363 / 1e-112 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 358 / 6e-112 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 352 / 7e-110 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033775 pacid=23172859 polypeptide=Lus10033775 locus=Lus10033775.g ID=Lus10033775.BGIv1.0 annot-version=v1.0 ATGGGTGCGCCCAAACAGAAGTGGACAGCAGATGAAGAAGCAGCACTTAAAGCAGGAGTGATTAAGCATGGTGCTGGGAAATGGCGAACAATACTTAAAG ATCCTGAATATAGTGGTGTCTTATACTTACGATCGAATGTGGATCTCAAGGACAAATGGAGAAATATGAGTGTTATGGCTCATGGATGGACCTCTAGGGA GAAGTCTAAGTTGGTCACTAAAAGGGTGCACAACGTTATAAAACAGGAAGAGAGTCCTGTGACCACTGGTAATAATGTTAAAAGTGATGAAGATGCTGTG GATATCAGGCCTCCTGAAGCTGCTGTCCCGTTGATGCAAATCCCTGCTCCTATAAGATCTGCCATACGTTCTGCTCTCCACAGAGGTTCCATGTTTGGTA GATCTCCTCTTATGAAATGCGTGAGTCGGCTCTTTCTCCCCAGCCATCTGCGCTCTCTTCTTCGGTCATGTGCACGCCAATCGTCTCTCTCTGCTGGGAA GCAGCTTCATGCAGTAATCTTTACTTCCGGCCTACAGGTGTCCTCAAATTCATTCCTTATGAACGCCCTTCTTCACTTGTACTCGTCTTGTGGAGTTCTC AATTATGCCCGCTGTTTGTTCAATCAAATTCCGCATTCTTACAAAGACACTGCAGATTGGACTTCTCTCTTGAATTGTCTTTCACAAAATGAAAAAAATC CTTTTGAAAGCTATTCATTGTTCTGTGAAATGCGGAGAAAGAATGTTATTGTGGATGATGTTGTGCTGCTTTGCATGCTTGGTTTGTGTGCTCGGGTGGG AGATTTCAAGATGGGAACTCAATTGCATGGATGTATGATGAAGATGGGTTTCAGGGACAGTGTTAAGACCTGCAATGCAATGATGAATATGCATGTGAAA TGTGGATTAATTGTGGACGCAAGGAGAATTTTTTTTGAAATGAATGAGCCTAATGTGGTGTCGTGGAGTATACTTTTGGAAGGTGTGATAAAGTGGGAAG GGGTACAAAAGGGGATGGAGTTGTTTGATGCAATGCCTGAGAAGAATGAAGTTGGATGGACTATAATGATTGCAGGTTGTGTTGAGAGTGGATTTATCAA GCAAGGGTGTAAGCTTTTGAATGAAATGGTTTTTTCGTCAGGCTTTAGGTTGAATTATGTTTCCCTTTGCTCTATTTTATCAGCTTCTGCACAGTCCGGT GATGTAGCAATTGGGAGGTGGGTTCATGTTTTTGCTTTGAAGGAAGGGGATTTAAATTTAATGGTCGGGACAGCTTTGGTGAACATGTATGCCAAGTGTG GCCGAATAAAGATGGCAATAAAAGTGTTTGATAATTTGCCTAGGAGGAATGTGGTGACATGGAATGCGATGCTTGGTGGTTTAGCCATGCATGGGAAGGG AAACACCGTGTTGGAGATGTTCAATAAGATGTTGAAAGAAGTTCCACCTGATGATTTGACCTTTATTGCTGTGCTTAGTGCCTGTAGTCATGCTGGTTTG GTGGATCAAGGTCGGAAGTATTTTCTTAATCTTCAATCAGAGTATGGAATAATACCAAAAATAGATCACTATGCTTGCATGGTTGATTTGCTTGGACGAG CTGGTCATTTAGAGGAAGCTGAAATTTTAATAGGGGATATGCCGATGCCTCCAAATGAGGTTGTTCTAGGATCCCTTTTGGGTTCTTGCAACATTCATGG GAAGTTGAAGCTTGGTGAGAAGATTCTACAAGATCTGGCTGAGATGGATCCACATAACACTGAGTACCATATATTACTATCCAATATCTATGCTTTATCA GGAAAGCTGGAACAAGCTAATTCTTTACGGGATGGCCTTGCTTCTAGGAGGATTAGGAAGATCCCTGGACTCAGCTCTATTCATGTTGGAGGGCATGTTC ATCAGTTTACTGCCGGTGATAAGTCACACCCTAGAACTTCAGAGATCTACCATACCCTGGATGATATGGTAATTAGGTTGAGGCTTGCTGGTTATGTCCC ACATACCGCCTCACAGGTTTTCTCAGGCGGTGATGGCAGTAATAACATAGAGGAGAAGGAGCAAGCACTTTTATTTCACAGTGAGAAGCTTGCATTCTGT TTTGGGCTCATAAGCACAAGACCTGAGACCGCAACAGATTCCACTGCTTCAGGCACGGTTCATGTTCTTGCTCTGATTATTGGTGATCTCGGTTGGAAGT CACTGTACAGAAAAGTGCCTTGCAATATGCCAACTGAGTCCCACTCGAGCTCATCAAAGTATAGTGAGGACGGTGTGGAATGGAATCAAATATGGCTGGA TAATCTTATAATGGAGGCTATTACCACGTTGATGGAGCCTGATGGTTCGAATAAGACTGCAATTGCTTCGTACATAGAGGAACAATATTGGCCACCTCAA GATTTCAAGAGGTTATTGTCAGAAAAACTCAAGCATCTGACTTCATGTGGTAAACTAATCAAGGTGAAACGGAAATACAGAATAGCAGCTACACCATTTG CGAACAGGAAGAGGAGTGCTTACATGTTACTGCAGGATGGAAGACCAAAGGCGTTTGAAAGAGCTGAGCGGGAGGATTTGAAAATGCCTACAAAAGCACA AGTTGATGTGGAAGTATCCAAGATGAGAAGACTGAGTGCACAAGCGGCGGAAGCTGCGGCTGCTAGAGCAGTTACGGAGGCAGATGCTGCTATAGCAGAA GCAGATGAGGCTGCAAGGGACGCAGAGGCTGCGGAAGCAGACGCCGAAGCGGCAGTGGCATATGCAGAAGCAGTGATGAAGACCTCCAAGGGGAGGAACA ATGCAAAGACGATGAGAGTCAATACACAGGGAAAGGAGTAG
AA sequence Show only first row Show all	>Lus10033775 pacid=23172859 polypeptide=Lus10033775 locus=Lus10033775.g ID=Lus10033775.BGIv1.0 annot-version=v1.0 MGAPKQKWTADEEAALKAGVIKHGAGKWRTILKDPEYSGVLYLRSNVDLKDKWRNMSVMAHGWTSREKSKLVTKRVHNVIKQEESPVTTGNNVKSDEDAV DIRPPEAAVPLMQIPAPIRSAIRSALHRGSMFGRSPLMKCVSRLFLPSHLRSLLRSCARQSSLSAGKQLHAVIFTSGLQVSSNSFLMNALLHLYSSCGVL NYARCLFNQIPHSYKDTADWTSLLNCLSQNEKNPFESYSLFCEMRRKNVIVDDVVLLCMLGLCARVGDFKMGTQLHGCMMKMGFRDSVKTCNAMMNMHVK CGLIVDARRIFFEMNEPNVVSWSILLEGVIKWEGVQKGMELFDAMPEKNEVGWTIMIAGCVESGFIKQGCKLLNEMVFSSGFRLNYVSLCSILSASAQSG DVAIGRWVHVFALKEGDLNLMVGTALVNMYAKCGRIKMAIKVFDNLPRRNVVTWNAMLGGLAMHGKGNTVLEMFNKMLKEVPPDDLTFIAVLSACSHAGL VDQGRKYFLNLQSEYGIIPKIDHYACMVDLLGRAGHLEEAEILIGDMPMPPNEVVLGSLLGSCNIHGKLKLGEKILQDLAEMDPHNTEYHILLSNIYALS GKLEQANSLRDGLASRRIRKIPGLSSIHVGGHVHQFTAGDKSHPRTSEIYHTLDDMVIRLRLAGYVPHTASQVFSGGDGSNNIEEKEQALLFHSEKLAFC FGLISTRPETATDSTASGTVHVLALIIGDLGWKSLYRKVPCNMPTESHSSSSKYSEDGVEWNQIWLDNLIMEAITTLMEPDGSNKTAIASYIEEQYWPPQ DFKRLLSEKLKHLTSCGKLIKVKRKYRIAATPFANRKRSAYMLLQDGRPKAFERAEREDLKMPTKAQVDVEVSKMRRLSAQAAEAAAARAVTEADAAIAE ADEAARDAEAAEADAEAAVAYAEAVMKTSKGRNNAKTMRVNTQGKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10033775 [exp]	0	1
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	1.7	0.9213
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10030154 [exp]	2.6	0.9268
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	5.3	0.9222
AT3G48340		CEP2	cysteine endopeptidase 2, Cyst...		Lus10033631 [exp]	6.6	0.8874
AT1G09050			unknown protein		Lus10037506 [exp]	7.9	0.9050
AT1G17330			Metal-dependent phosphohydrola...		Lus10040985 [exp]	8.0	0.9016
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	9.2	0.9124
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10014333 [exp]	11.2	0.8941
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10005198 [exp]	13.0	0.8869
AT1G30540			Actin-like ATPase superfamily ...		Lus10033600 [exp]	15.5	0.8929

Compare expression of checked genes

Lus10033775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.