Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 358 / 2e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 318 / 2e-92 transmembrane receptors;ATP binding (.1.2) AT1G27180 295 / 4e-84 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 271 / 2e-76 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 264 / 6e-74 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 246 / 4e-69 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 245 / 5e-68 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72840 240 / 2e-66 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G63880 239 / 4e-66 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 238 / 9e-66 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 573 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 473 / 1e-150 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018972 [exp] 455 / 6e-149 AT5G36930 192 / 3e-51 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 371 / 2e-111 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 363 / 3e-109 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 332 / 7e-98 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 328 / 2e-96 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10041060 [exp] 307 / 1e-88 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 299 / 7e-87 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099700 [exp] 595 / 0 AT5G36930 562 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G028750 [exp] 559 / 0 AT5G36930 516 / 3e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009400 [exp] 518 / 3e-171 AT5G36930 504 / 4e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009251 [exp] 518 / 7e-168 AT5G36930 508 / 1e-160 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G018800 [exp] 509 / 1e-165 AT5G36930 512 / 7e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008164 [exp] 509 / 7e-165 AT5G36930 491 / 3e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008868 [exp] 505 / 2e-163 AT5G36930 471 / 1e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013900 [exp] 502 / 5e-162 AT5G36930 441 / 1e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008292 [exp] 501 / 1e-161 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008228 [exp] 491 / 9e-161 AT5G36930 468 / 3e-148 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10033825 pacid=23172733 polypeptide=Lus10033825 locus=Lus10033825.g ID=Lus10033825.BGIv1.0 annot-version=v1.0 ATGGACCTCAGGAGGTCTCTTCATTGCATGGTTGTGCCGATCTTCTATGTGGATCCGATGCTAGTTTCAGATCAGACAGATAGTTATGCAGCTGCATTTG CTTGTCATGAAAAATTCTTCAAAGACAAGGCCGATATATGGAAGGCCGCTCTTAGAGAAGTTTCGGATTTGGGTGGTATGGTTTTGCAGGACGGGTATCA AGCCGAGTTTGTTCAAGATGCAGTAAAGATGGTCAGGAAGAAGTTGAACCGTCCAGTTGTACACACTCCCTCCCTCTTAATCGGAATGGATTCGCGTATG GCTGAAATTGAATTGTGGTTACAAGACAGCTCAGCTGCTCATATTGGAGTAATCTATGGAATTGGTGGTATCGGGAAGACGACGATTGCAAAGGAAGTCT TTAATCTGAATTTAGATAGATTTGAAGCTAGTTGCTTTCTTCCAAATATCAGAGAACGTTCAAAGCAGCCCAATGGCTCTGTTCTATTGCAGAAGCAGCT TCTCAACACAATTCTGTATGACCAAAATGTGAAGGTAAACAATGTAGCTGAAGGGAGTAACAAGATCAAAGATGCAATAAGTTGTAGAAGGGTTCTTATT GTTTTGGATGATGTGAATCATTTGGATCAACTTAACACAATCATAGGATCATGGGATTGGCTATATGAGGGTAGTAGGATCATCATAACAACTCGGCACA AACGTTTGGTCAAGGATGATAAAATTTGCAACAAGTTTAGAGTTGAGGGATTGAATGAGGATGAGTCACTTAGGCTATTTAGTGAGCATGCCTTTGGACA GGTTCAGCCTATTGATGGATACATGGAGCATTCAATAAGGGCAGTGAAGAACTGTTGTGGGCTTCCTCTAGCCATTCATGTTCGGGGTTCCTTTCTGTGT GATATAGACGGTATCGAGTGGGAAAGTGCATTGAATAAGATGGAAGCAATGCTGGATAGTAAAATCCTTAACATTCTTAGAGTAAGTTATGATTCTCTGA AGGATGATCTAGATAAAAGTTTGTTCTTGCATATAGCTTTTTTCTTCCAAGGAATGGACAAAGATTACGTAACAACGGTTCTAGACGGCTGTGAGCTGTT TGCAAAAGCCGGAATTCAAGATCTCATCGATAGGTTTCTTGTGACGGTCAGTGACGATAACAGGCTTATGATGCACCCCTTACTTAGAGAGATGGCAAGG GAAATAATCCGCCAAGAGTCACCAGAAGACCCGGGAAGACGCAGCAGAATCTGGTCTCATGATGATGCCATCAGCGTGTTGAGAGAAAATACGGGTACAG AAGCAATCAAAGGCATCAATCTTGATTTCCAGGGTAGCATGACCGAGTCAGAACAGCAAACCCATTCTTGTGCCAGTTATGGGAGACGACATTTTCATGA AGATGGTCATGATTGCAAATCCTCAGCAAAAAGGCGTGTTCTTGGGTCTCATTACGTTGAACTTGAAACAAAAGCATTTCGAAAGACGTGCAACTTAAAA CTGCTCCGTATCAACAATGCAAAGCTGAAGGGAGACTTTAAAGGTTTCCCTCGAAGTTTAATATGGCTGTTCTGGCATGGATCCTCGTTGAAATACATAC CACCCAGTTTATATCTGGAGAAGCTTGTTGTTCTTGACATGCAAAGAAGCAGTCTAAAGCATGTCTGGAACGGCACCAGGATACTTCCAGCGTTGAAAAT CCTTAATCTCAGCTACTGCCATGAACTTGTAGCCGCCCCCGACTTCTCAGGGCTGCCTTGCCTTGAAAGATTAGCACTGGAGGACTGCATAAGCTTAGCC GAGATCCATGAATCGATTGGCAAGGTAGAAAAGCTTGTTCTGTTAAACCTGAAAGGCTGCAAAAAGCTGAGGAAACTGCCGTACACTGTTGTTACGCTGA AATCAGTTGAAGAAATTGTTCTCTCTGGTTGTTTGAAACTTGAAGAGCTGCCTCAAGGGCTAGATACGATTCCATCACTCAAGGTGCTTCATGCTGATGG TATAGATACATCTCACTCCGGAGTATGGGATGCTGCTGAGATTTACAGCCTGAATAATCAACCATGGACATCACTTGCTACTTGCAAGTCCTCCGTGGGT GTTAACCCGGTCCGTCAGCACCATACATTTCGGTACGAGATGCTTTACTGGTGGGAGTACAACAAGGGGAAAACCTACATGCTGTCATTTGACATGAAGA AACATGTGTTTGGTTCGACCTCGTTCATCAATCCAACATGTTGGTTTGGTGAAACATTCTGGCTGATGAAGGATTGCATCGTGGGTGTTAGTTGTAGTAA TCGCTTCTTTGAGATGTGGGCATTATTGAAATTTGACTCGGAACGATCTTGGACTAAGCTTTTTACGACGTTCAATATTCTTAGGCACAACCTGCAGAAA ATACGGAAGGATGGATTTTATATGTTCGACATCTACAATGACGCAACTCCGAGTTTGTACGCCTACAAACTAGATGACGAAAGCAGCTTCGATGTCGAGG TAGAGAACTTGAGCGAGGAGTTGGAGATGGTGACATATGTTCCATCCAAGATTTCACTAGCCGGGTTGAAGAGAAATCAATGA
AA sequence Show only first row Show all	>Lus10033825 pacid=23172733 polypeptide=Lus10033825 locus=Lus10033825.g ID=Lus10033825.BGIv1.0 annot-version=v1.0 MDLRRSLHCMVVPIFYVDPMLVSDQTDSYAAAFACHEKFFKDKADIWKAALREVSDLGGMVLQDGYQAEFVQDAVKMVRKKLNRPVVHTPSLLIGMDSRM AEIELWLQDSSAAHIGVIYGIGGIGKTTIAKEVFNLNLDRFEASCFLPNIRERSKQPNGSVLLQKQLLNTILYDQNVKVNNVAEGSNKIKDAISCRRVLI VLDDVNHLDQLNTIIGSWDWLYEGSRIIITTRHKRLVKDDKICNKFRVEGLNEDESLRLFSEHAFGQVQPIDGYMEHSIRAVKNCCGLPLAIHVRGSFLC DIDGIEWESALNKMEAMLDSKILNILRVSYDSLKDDLDKSLFLHIAFFFQGMDKDYVTTVLDGCELFAKAGIQDLIDRFLVTVSDDNRLMMHPLLREMAR EIIRQESPEDPGRRSRIWSHDDAISVLRENTGTEAIKGINLDFQGSMTESEQQTHSCASYGRRHFHEDGHDCKSSAKRRVLGSHYVELETKAFRKTCNLK LLRINNAKLKGDFKGFPRSLIWLFWHGSSLKYIPPSLYLEKLVVLDMQRSSLKHVWNGTRILPALKILNLSYCHELVAAPDFSGLPCLERLALEDCISLA EIHESIGKVEKLVLLNLKGCKKLRKLPYTVVTLKSVEEIVLSGCLKLEELPQGLDTIPSLKVLHADGIDTSHSGVWDAAEIYSLNNQPWTSLATCKSSVG VNPVRQHHTFRYEMLYWWEYNKGKTYMLSFDMKKHVFGSTSFINPTCWFGETFWLMKDCIVGVSCSNRFFEMWALLKFDSERSWTKLFTTFNILRHNLQK IRKDGFYMFDIYNDATPSLYAYKLDDESSFDVEVENLSEELEMVTYVPSKISLAGLKRNQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10033825 [exp]	0	1
AT2G17787			unknown protein		Lus10013567 [exp]	3.6	0.8934
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032037 [exp]	5.5	0.8916
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037733 [exp]	6.2	0.8678
AT5G36930			Disease resistance protein (TI...		Lus10018972 [exp]	7.3	0.8812
AT1G07650			Leucine-rich repeat transmembr...		Lus10010950 [exp]	11.0	0.8838
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10011126 [exp]	11.7	0.8844
AT4G36550			ARM repeat superfamily protein...		Lus10041754 [exp]	13.7	0.8405
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	15.3	0.8915
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10041854 [exp]	15.4	0.8659
AT3G25060			Tetratricopeptide repeat (TPR)...		Lus10025915 [exp]	15.7	0.8334

Compare expression of checked genes

Lus10033825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.