Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45380 752 / 0 ATDUR3 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037255 [exp] 911 / 0 AT5G45380 1095 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1) Lus10003564 [exp] 581 / 0 AT5G45380 778 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1) Lus10003565 [exp] 238 / 2e-75 AT5G45380 169 / 9e-50 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1) Lus10009805 [exp] 94 / 5e-21 AT2G25010 54 / 6e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10008465 [exp] 78 / 1e-16 AT2G04865 49 / 2e-07 Aminotransferase-like, plant mobile domain family protein (.1) Lus10023395 [exp] 55 / 3e-08 AT1G17930 52 / 4e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10008144 [exp] 50 / 6e-07 AT1G17930 54 / 4e-10 Aminotransferase-like, plant mobile domain family protein (.1) Lus10033258 [exp] 49 / 6e-07 AT1G17930 56 / 3e-10 Aminotransferase-like, plant mobile domain family protein (.1) Lus10002099 [exp] 44 / 8e-05 ND 39 / 7e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G104000 [exp] 821 / 0 AT5G45380 1028 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00474 [flax] [poplar] SSF Sodium:solute symporter family
Representative CDS sequence Show only first row Show all	>Lus10033882 pacid=23172818 polypeptide=Lus10033882 locus=Lus10033882.g ID=Lus10033882.BGIv1.0 annot-version=v1.0 ATGTTACATCTCCATGAGAACGATTTGAGGCCGATGTACTATTCAAAGGGTGGGATGCATGTGGACAGAGCCCTGTCGGCAGCAGCGACAGGTGAGCTCC CTAATGCCGACACCGCCAGTTGCTACTTGTTCAGTGTGCTTGCGTCTACATTGTTTGTGGACCGCATGGGGGCATCGGTCGTGTTAGCATCCTGGAGGGT ATTAGTGACATCGACAGGATGGGGAACCCATGCCCACATTATGTTCCTCTTCTTCTGTTTCATGACCAACATCATCTTCACTGCAATGCTTCTCCTTGGA GGCTCGGCTGTCGTCAATGCAGTCACCGGAGTTAACATCTATGCTGCCAGTTTCCTCATCCCTCTTGGTGTCATTCTCTACACTCTAGCCGGTGGCCTCA AGGCCACTTTCTTAGCCAGCTACATCCACTCTCTCATTGTTCATCTGGTTCTGCTCGTATATGTCTACTTAGTCTACACATCCAGCAGCGAACTTGGCAG TCCGGGTGTCCTTTATCGTCGCTTGTTAGATGTTACAAGCAAATCAAGAGTCTGTCAAGAGCCAATCTCCCACGCTGGCCAATCATGCGGCCCTGTCGAA GGAAACTACAACGGCTCTTATCTTACCATGCTAAGTCCCGGAGGGCTCGTCTTTGGTATCATCAACATTGTTGGCAACTTTGGTGCAGTTTTCGTTGACA ATGGGTATTGGGTGAGTGCCATAGCTGCAAGGCCTTCCTCAACTCACAAGGGTTATTTGTTAGGAGGTTTAGTATGGTTTGCTGTCCCTTTCTCTCTTGC AACTTCATTGGGGCTAGGAGCTCTTGCACTGGACCTCCCGATAACTCAGACAGAAGCCAGCCATGGACTTGTTCCTGCTGCCACTGCTACTGCCTTGATG GGGAAATCTGGATCTGTTCTTCTCCTCACCATGCTTTTCATGGCTGTGACTTCTGCTGGATCATCTGAGCTAATTGCAGTGTCTTCGTTGTGCACGTACG ATATCTACCGCACGTACATTAACCCTAATGCGAGCGGGAAAAGGATCCTACTAGTATCAAGGGCAGTGGTGTTATGTTTTGGATGCTTCATGGGTTTGCT GGCTGTAATACTGAACAAGGCTGGAGTGTCATTAGGTTGGATGTACCTAGCCATGGGAGTGTTGATTGGCTCAGCTGTTATCCCAATTGCTTTCATGCTC CTTTGGAAGAAAGCCAACGCAATAGGCGCCATACTAGGAACTGTAATAGGCTGCCTTCTGGGGATAACAACCTGGATATCAGTCACGAGGATCGAATATG GCCGGATTGATCTGGAGACAACAGGTAAAAATGCCCCGGCGCTGGCTGGTAACCTTGTCTCCATACTAAGCGGAGGAGCTATTCATGCTGTGTGCAGTCA GGTATGGCCTCAGAACTATGAATGGGATACAACAAGGAAGATCACAACCGTGGAGAAGGTGACTAATAGTGAAGAACTTCCGACTGAAGAGTTCGAAGAG GTGAATCTCAAGAGGGCCAAAGCATGGATTGTCAAATGGGGAATTGCTTTCACTCTTGTTATCGTTGTATTGTGGCCACTTCTCAGCCTTCCAGCCAGGG AGTTCAACTTGGGATACTTCACTTTCTGGGCTGTGATTTCCATAGCATGGGGCACCATTGGATCGGCAGTGATTATCGCTCTCCCTTTGATCGAAAGTCG GGATACCATCCGAGATGTGTTCCTTGGGATGTTTACAAATGACAGGCTAATGGAGAAACTTACAAAGATTGACACGAAGCTGCAAACTATCATACTGACT ATTCCTGAAGCCGAAATTTCGTACCTGCTTGAGAAGGATAATAAAGCTAAGAAGAGACGTGAGTCTCCATCTGAAGCTTAG
AA sequence Show only first row Show all	>Lus10033882 pacid=23172818 polypeptide=Lus10033882 locus=Lus10033882.g ID=Lus10033882.BGIv1.0 annot-version=v1.0 MLHLHENDLRPMYYSKGGMHVDRALSAAATGELPNADTASCYLFSVLASTLFVDRMGASVVLASWRVLVTSTGWGTHAHIMFLFFCFMTNIIFTAMLLLG GSAVVNAVTGVNIYAASFLIPLGVILYTLAGGLKATFLASYIHSLIVHLVLLVYVYLVYTSSSELGSPGVLYRRLLDVTSKSRVCQEPISHAGQSCGPVE GNYNGSYLTMLSPGGLVFGIINIVGNFGAVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPITQTEASHGLVPAATATALM GKSGSVLLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPNASGKRILLVSRAVVLCFGCFMGLLAVILNKAGVSLGWMYLAMGVLIGSAVIPIAFML LWKKANAIGAILGTVIGCLLGITTWISVTRIEYGRIDLETTGKNAPALAGNLVSILSGGAIHAVCSQVWPQNYEWDTTRKITTVEKVTNSEELPTEEFEE VNLKRAKAWIVKWGIAFTLVIVVLWPLLSLPAREFNLGYFTFWAVISIAWGTIGSAVIIALPLIESRDTIRDVFLGMFTNDRLMEKLTKIDTKLQTIILT IPEAEISYLLEKDNKAKKRRESPSEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10033882 [exp]	0	1
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10026009 [exp]	1.4	0.9466
					Lus10033284 [exp]	1.7	0.9528
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10041752 [exp]	2.4	0.9197
AT3G10910			RING/U-box superfamily protein...		Lus10029037 [exp]	3.0	0.9372
AT5G51160			Ankyrin repeat family protein ...		Lus10029006 [exp]	4.6	0.8963
AT5G61340			unknown protein		Lus10003483 [exp]	5.4	0.8835
AT3G19550			unknown protein		Lus10013900 [exp]	5.7	0.9328
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Lus10039511 [exp]	6.7	0.9209
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10041341 [exp]	8.0	0.9090
AT3G53940			Mitochondrial substrate carrie...		Lus10012658 [exp]	9.8	0.8805

Compare expression of checked genes

Lus10033882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.