Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23240 139 / 1e-40 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT2G31230 127 / 8e-36 AP2_ERF ATERF15 ethylene-responsive element binding factor 15 (.1) AT5G43410 102 / 2e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G06160 103 / 1e-26 AP2_ERF ORA59 octadecanoid-responsive Arabidopsis AP2/ERF 59 (.1) AT5G51190 100 / 2e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44840 97 / 4e-24 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT4G17500 97 / 5e-24 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G47220 97 / 6e-24 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT3G23230 94 / 6e-24 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT4G11140 97 / 8e-24 AP2_ERF CRF1 cytokinin response factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003562 [exp] 310 / 5e-107 AT3G23240 146 / 1e-43 ethylene response factor 1 (.1) Lus10027469 [exp] 224 / 7e-74 AT3G23240 145 / 2e-43 ethylene response factor 1 (.1) Lus10014655 [exp] 147 / 3e-43 AT3G23240 202 / 3e-65 ethylene response factor 1 (.1) Lus10006579 [exp] 139 / 2e-40 AT3G23240 211 / 4e-69 ethylene response factor 1 (.1) Lus10022015 [exp] 124 / 8e-35 AT3G23240 176 / 1e-55 ethylene response factor 1 (.1) Lus10042557 [exp] 121 / 9e-34 AT3G23240 155 / 7e-48 ethylene response factor 1 (.1) Lus10021193 [exp] 120 / 6e-33 AT3G23240 209 / 2e-68 ethylene response factor 1 (.1) Lus10011829 [exp] 118 / 6e-32 AT3G23240 209 / 4e-68 ethylene response factor 1 (.1) Lus10025430 [exp] 104 / 8e-28 AT3G23240 132 / 6e-39 ethylene response factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G223300 [exp] 157 / 4e-47 AT3G23240 163 / 5e-50 ethylene response factor 1 (.1) Potri.002G039000 [exp] 144 / 4e-42 AT3G23240 138 / 2e-40 ethylene response factor 1 (.1) Potri.013G045200 [exp] 132 / 9e-38 AT3G23240 167 / 5e-52 ethylene response factor 1 (.1) Potri.019G014409 [exp] 129 / 2e-36 AT3G23240 161 / 1e-49 ethylene response factor 1 (.1) Potri.005G223200 [exp] 124 / 1e-34 AT3G23240 165 / 4e-51 ethylene response factor 1 (.1) Potri.002G039100 [exp] 124 / 1e-34 AT3G23240 147 / 3e-44 ethylene response factor 1 (.1) Potri.008G166200 [exp] 119 / 1e-32 AT3G23240 202 / 1e-65 ethylene response factor 1 (.1) Potri.004G051800 [exp] 117 / 2e-31 AT4G18450 127 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.010G072300 [exp] 114 / 5e-31 AT3G23240 201 / 2e-65 ethylene response factor 1 (.1) Potri.011G061800 [exp] 113 / 8e-30 AT4G18450 134 / 2e-37 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10033885 pacid=23172865 polypeptide=Lus10033885 locus=Lus10033885.g ID=Lus10033885.BGIv1.0 annot-version=v1.0 ATGTTGGATCCTTACTACAACTACTACTCCTCATCACCCTCACCGCTAGACTACCTCTCTTCTCCGCCACCGCCGCCGCACACCCATTCCCCCCCCCCCC CCCCGCCGCAAACCCATTATTGGGGCCCAGACGGCGGAGAACTACAACAAGAAGAAGAAGAAGCAAGTAACTTCCTCCTCTACCCTCCATCAAACTCAAC TTCCTCTTCCGATCCTTGCTCCCAGGCGCCGCCACCGCCGCCTCTAGAAGAAGCAACTTCCTCCTCCGGAAAGAAGAAGAAGAAGCAAACAAAGAACAAC AACAGCACTGCTACTACGGTTTACAAGTCGGCGTACAGAGGGGTGAGGACTCGGCCGTGGGGGAAGTACGCGGCGGAGATTCGAGACTCGACGAGGCACG GGGTGAGGGTGTGGCTCGGGACATTCGACACACCTGAAGAGGCGGCGCTGGCCTACGATCAAGCCGCTCTGTCTCTTCAAGGTTCGAGGGCGGTGCTCAA CTTCCCTGCAGAGGAAGTGAGCCGATCTCTTGAGGAGATCGGGTGCGGCCTAGGGGAATGCTCCTCTCCTGCTCAGGCTCTTAAGCAGACGAATTACGTT AAGCGTAAGGCCCTCAGTAGGAAGAGGAAAGGTAAACGAGGGGTCATTGACCAGGGTGATCTTGGGATAGCGAATTCGAATCCAATAATTAAAAAAGAAG AGGTGGTAGAGTTTGAGGATTTGGGGACTGCTTTTTTGGAGCAACTTCTATTTGAGAGCTCAACTACTAATTATTAA
AA sequence Show only first row Show all	>Lus10033885 pacid=23172865 polypeptide=Lus10033885 locus=Lus10033885.g ID=Lus10033885.BGIv1.0 annot-version=v1.0 MLDPYYNYYSSSPSPLDYLSSPPPPPHTHSPPPPPPQTHYWGPDGGELQQEEEEASNFLLYPPSNSTSSSDPCSQAPPPPPLEEATSSSGKKKKKQTKNN NSTATTVYKSAYRGVRTRPWGKYAAEIRDSTRHGVRVWLGTFDTPEEAALAYDQAALSLQGSRAVLNFPAEEVSRSLEEIGCGLGECSSPAQALKQTNYV KRKALSRKRKGKRGVIDQGDLGIANSNPIIKKEEVVEFEDLGTAFLEQLLFESSTTNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10033885 [exp]	0	1
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10012436 [exp]	6.9	0.8480
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013936 [exp]	10.8	0.8221
AT2G21120			Protein of unknown function (D...		Lus10010893 [exp]	18.4	0.8454
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10009182 [exp]	21.4	0.8447
					Lus10025501 [exp]	23.5	0.8452
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004441 [exp]	26.0	0.8428
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10028345 [exp]	26.5	0.8057
AT5G02580			Plant protein 1589 of unknown ...		Lus10025300 [exp]	27.7	0.8224
AT4G37030			unknown protein		Lus10011021 [exp]	39.9	0.8235
AT2G21100			Disease resistance-responsive ...		Lus10025064 [exp]	40.8	0.8360

Compare expression of checked genes

Lus10033885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.