Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31180 227 / 5e-74 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT1G06180 225 / 3e-73 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT3G23250 218 / 7e-70 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT3G61250 207 / 3e-65 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G21440 205 / 5e-64 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G16770 202 / 4e-63 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 200 / 2e-62 MYB ATMYB107 myb domain protein 107 (.1) AT5G10280 200 / 2e-62 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT4G05100 198 / 1e-61 MYB ATMYB74 myb domain protein 74 (.1) AT4G28110 196 / 3e-61 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003557 [exp] 405 / 3e-143 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10021871 [exp] 213 / 1e-68 AT3G23250 233 / 9e-77 myb domain protein 15 (.1.2) Lus10041145 [exp] 212 / 5e-68 AT3G23250 237 / 3e-78 myb domain protein 15 (.1.2) Lus10021185 [exp] 210 / 4e-67 AT3G23250 231 / 1e-75 myb domain protein 15 (.1.2) Lus10011820 [exp] 208 / 3e-66 AT3G23250 225 / 2e-73 myb domain protein 15 (.1.2) Lus10030378 [exp] 209 / 4e-66 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10014784 [exp] 206 / 3e-65 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10022021 [exp] 201 / 2e-64 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10042561 [exp] 201 / 3e-64 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G038500 [exp] 249 / 2e-82 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G224100 [exp] 244 / 2e-80 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.008G166700 [exp] 215 / 7e-69 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.019G018200 [exp] 213 / 1e-68 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.007G093900 [exp] 204 / 9e-64 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.019G118200 [exp] 204 / 2e-63 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.011G041600 [exp] 204 / 2e-63 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 204 / 2e-63 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.002G157600 [exp] 202 / 2e-63 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.003G144200 [exp] 201 / 2e-63 AT5G49330 205 / 2e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033889 pacid=23172766 polypeptide=Lus10033889 locus=Lus10033889.g ID=Lus10033889.BGIv1.0 annot-version=v1.0 ATGGGGAGAGCTCCATGTTGTGAGAAGATGGGTCTGAAGAAGGGACCTTGGACCTCTGAAGAAGACCATATTCTCACCAATTACATTCAGCTCTACGGCC ACGGCAACTGGCGAGCCCTCCCCAAGCTTGCCGGATTGTTGAGGTGCGGGAAAAGTTGCCGGCTGCGATGGACCAATTACTTGAGGCCTGACATCAAACG AGGAAATTTCACCCCTGACGAGGAAGACACAATCATCGAATTGCACAACATGTTAGGAAACAGGTGGTCGACGATTGCGGCGAAATTACCGGGGCGGACG GACAACGAGATTAAAAATGTATGGCATACCCACTTGAAGAAGAGAGTGATGGCGATGATGACGCCGACGAAGCAAAACGACGATCAGCAGAATAATCCAC TGCCTCCTCCGGGGACTAACAAGCGGAGATCGTCCGCCGGCAAGAAAACCAAGAGCATCAGCAGCATTATTAAATCGGATCAGGCGGCAGGGGAACCTGC AAATTTAACGACGGCCATGGTACCGGCGGAGTGCTCGAGCGACGACGCGTCATCCCTGACGACTGCGGAGAACAACGATGCGGTGAAGGCGGAGGACATT TCATCGAGGGAGGAAAATTTGAATAATGAGGAAATGGACGAGAGTTTCTGGTCGGAGGTGTTGTCGGCGGAGAATACGAGCAGCGTGGTTGAACCGGAAC TTGGGTCGGGGTTGTTTGGGTTCGAGTCGTTGGTAAGTAGTAGTAGTGTGGTAGGCGGCGATGACCAGGAAGGGGAGGGGGCGGCGGCGGCAGCCCTGCT GGGGGATGATTCAAACGTGGACTATAGTAGCATGGATTTTTGGTACAACTTTTTGACTGGGGATGGGGAATTATCACAGCTTCCACCAATTTGA
AA sequence Show only first row Show all	>Lus10033889 pacid=23172766 polypeptide=Lus10033889 locus=Lus10033889.g ID=Lus10033889.BGIv1.0 annot-version=v1.0 MGRAPCCEKMGLKKGPWTSEEDHILTNYIQLYGHGNWRALPKLAGLLRCGKSCRLRWTNYLRPDIKRGNFTPDEEDTIIELHNMLGNRWSTIAAKLPGRT DNEIKNVWHTHLKKRVMAMMTPTKQNDDQQNNPLPPPGTNKRRSSAGKKTKSISSIIKSDQAAGEPANLTTAMVPAECSSDDASSLTTAENNDAVKAEDI SSREENLNNEEMDESFWSEVLSAENTSSVVEPELGSGLFGFESLVSSSSVVGGDDQEGEGAAAAALLGDDSNVDYSSMDFWYNFLTGDGELSQLPPI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10033889 [exp]	0	1
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	1.0	0.9878
AT1G66880			Protein kinase superfamily pro...		Lus10028494 [exp]	2.0	0.9841
AT5G38210			Protein kinase family protein ...		Lus10028495 [exp]	3.0	0.9814
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10017775 [exp]	3.9	0.9793
AT1G32160			Protein of unknown function (D...		Lus10035392 [exp]	5.3	0.9795
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021028 [exp]	6.9	0.9733
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10014463 [exp]	7.1	0.9629
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10026936 [exp]	7.7	0.9714
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10033308 [exp]	7.7	0.9746
AT1G47530			MATE efflux family protein (.1...		Lus10042344 [exp]	8.4	0.9762

Compare expression of checked genes

Lus10033889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.