Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT1G55360	276 / 1e-89		Protein of Unknown Function (DUF239) (.1)
AT5G56530	275 / 6e-89		Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
AT2G44220	273 / 2e-88		Protein of Unknown Function (DUF239) (.1)
AT3G13510	273 / 3e-88		Protein of Unknown Function (DUF239) (.1)
AT5G18460	264 / 2e-84		Protein of Unknown Function (DUF239) (.1)
AT2G44210	259 / 5e-83		Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
AT3G48230	253 / 7e-81		Protein of Unknown Function (DUF239) (.1)
AT2G17750	252 / 2e-80	NIP1	NEP-interacting protein 1 (.1)
AT1G23340	246 / 7e-78		Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
AT1G10750	245 / 1e-76		Protein of Unknown Function (DUF239) (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10006861 [exp]	282 / 4e-92	AT5G18460	272 / 8e-88	Protein of Unknown Function (DUF239) (.1)
Lus10006862 [exp]	279 / 4e-91	AT2G44220	265 / 1e-85	Protein of Unknown Function (DUF239) (.1)
Lus10036998 [exp]	270 / 5e-86	AT2G44220	247 / 9e-77	Protein of Unknown Function (DUF239) (.1)
Lus10013410 [exp]	266 / 2e-85	AT3G13510	708 / 0.0	Protein of Unknown Function (DUF239) (.1)
Lus10037600 [exp]	262 / 3e-84	AT1G10750	253 / 5e-80	Protein of Unknown Function (DUF239) (.1)
Lus10004766 [exp]	262 / 2e-83	AT5G18460	603 / 0.0	Protein of Unknown Function (DUF239) (.1)
Lus10006863 [exp]	255 / 1e-81	AT2G44220	246 / 5e-78	Protein of Unknown Function (DUF239) (.1)
Lus10006859 [exp]	249 / 3e-79	AT2G44220	266 / 1e-85	Protein of Unknown Function (DUF239) (.1)
Lus10036985 [exp]	251 / 1e-77	AT2G44220	218 / 7e-65	Protein of Unknown Function (DUF239) (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.003G221200 [exp]	276 / 3e-89	AT1G55360	716 / 0.0	Protein of Unknown Function (DUF239) (.1)
Potri.001G003800 [exp]	275 / 4e-89	AT1G55360	689 / 0.0	Protein of Unknown Function (DUF239) (.1)
Potri.001G233000 [exp]	274 / 3e-88	AT3G13510	621 / 0.0	Protein of Unknown Function (DUF239) (.1)
Potri.013G050100 [exp]	263 / 5e-84	AT5G18460	635 / 0.0	Protein of Unknown Function (DUF239) (.1)
Potri.019G024100 [exp]	259 / 1e-82	AT5G18460	622 / 0.0	Protein of Unknown Function (DUF239) (.1)
Potri.015G080300 [exp]	247 / 2e-77	AT5G50150	637 / 0.0	Protein of Unknown Function (DUF239) (.1)
Potri.010G044300 [exp]	246 / 3e-77	AT1G70550	664 / 0.0	Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
Potri.008G188000 [exp]	242 / 1e-75	AT1G70550	661 / 0.0	Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
Potri.012G088300 [exp]	238 / 2e-74	AT5G50150	592 / 0.0	Protein of Unknown Function (DUF239) (.1)
Potri.006G233700 [exp]	197 / 1e-59	AT5G25950	333 / 1e-111	Protein of Unknown Function (DUF239) (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF03080 [flax] [poplar]	Neprosin	Neprosin

Representative CDS sequence

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>Lus10033910 pacid=23172854 polypeptide=Lus10033910 locus=Lus10033910.g ID=Lus10033910.BGIv1.0 annot-version=v1.0

ATGGGGAAAGATACCCACCAAATAAGCAAATGGAAGATATCAATTCTTCTCCTAATGATAACAACATCTCTCAAAGTTCATGCATTGAGCAATGGCACTG

CTGCCGCTGGAAATGGTATCGTGAAAACGATACAGAGTGAAGATGGCTGTGTCATTCATTGTGTCAACCTATACAAACAGCCAGCTTTCAGTCACCCACT

TCTCAAGAACCATGTTATACAGATGAAACCCAGTTCACATCTAGTTGAAATCAATTCATCACCAAACTCCGGCCAGAACAGTTTTGCTCTGAGGGTAACC

CAAAGTTGGCACAAGAAGAAGGGAGGTTTTTGTCCCGAGGGGACGATACCAATTGCGAAGTCTCAAGGGACCTTGCCCCGCAAGATAGCACATATTAATT

ACAACGGTGGCCGTCCCAACTCGAAAGAAACGGACCCGAAGGGTCATGAGTTTGCTGAAGTGCAACTGCTTGGAGGGTATTTCTATGGAGCCACTGCAAA

TCTCAATCTCTGGCAGCCTAAAGTGTTGGATAACGAGTTCAGCACAGCTGAAATTTGGGTTTATTCTGGTCCAGAAGTGAATTCCATGGAGGCTGGTTGG

ATGGTTTCTCCACCAAATTTAAAACAACCAACTCTGTTCACATATTGGACTAGAGATGAATATCAGTCAACAGGGTGCTACAACTTGGAGTGCCCAGGTT

TTGTCCAAACAAGCTACAAGTATGCATTGGGCGCAGGAATAGCTCCTGTTTCAACCTATGGTGGAAAGCAGTTCCAGATTTCATTAACCATCCGCAAGGA

TTCAAAAAGTGGGAACTGGTGGCTGAACTTACAAGGAGAGAACATGGGATACTGGCCATCATCCATATTCACAAGCTTAGCAGAAAGTTCCACGCTAATA

AGTTGGGGTGGAGAGGTGAAGAACAGTAAACCAAATGGGAAGCACACAAGTACTGAAATGGGAAGTGGGCATAATCCGAGTGAGGGTTTTGCAAAAGCAA

GTTTTTTCAGTGATGTGGCGGCCTACTACACCATTGATGGTGTCCCAAAACCACCTCGACTACTCCAACCTTACACCACTAATGAACACTGTTACAATGT

GTCCATCGCCCCTCATGTCGATAGCTACGGGCTTCATTTCTACTATGGTGGGCTTGGATTCTCACCCTCTTGTCCATGA

AA sequence

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>Lus10033910 pacid=23172854 polypeptide=Lus10033910 locus=Lus10033910.g ID=Lus10033910.BGIv1.0 annot-version=v1.0

MGKDTHQISKWKISILLLMITTSLKVHALSNGTAAAGNGIVKTIQSEDGCVIHCVNLYKQPAFSHPLLKNHVIQMKPSSHLVEINSSPNSGQNSFALRVT

QSWHKKKGGFCPEGTIPIAKSQGTLPRKIAHINYNGGRPNSKETDPKGHEFAEVQLLGGYFYGATANLNLWQPKVLDNEFSTAEIWVYSGPEVNSMEAGW

MVSPPNLKQPTLFTYWTRDEYQSTGCYNLECPGFVQTSYKYALGAGIAPVSTYGGKQFQISLTIRKDSKSGNWWLNLQGENMGYWPSSIFTSLAESSTLI

SWGGEVKNSKPNGKHTSTEMGSGHNPSEGFAKASFFSDVAAYYTIDGVPKPPRLLQPYTTNEHCYNVSIAPHVDSYGLHFYYGGLGFSPSCP

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44220			Protein of Unknown Function (D...		Lus10033910 [exp]	0	1

Lus10033910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10033910 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10033910 coexpression network