Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54220 402 / 4e-133 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G41920 334 / 4e-110 GRAS GRAS family transcription factor (.1) AT1G63100 217 / 1e-62 GRAS GRAS family transcription factor (.1) AT1G14920 208 / 2e-60 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G66350 198 / 7e-57 GRAS RGL1 RGA-like 1 (.1) AT2G01570 198 / 4e-56 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT3G03450 191 / 7e-54 GRAS RGL2 RGA-like 2 (.1) AT5G66770 181 / 8e-50 GRAS GRAS family transcription factor (.1) AT5G17490 178 / 2e-49 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G04890 171 / 8e-48 GRAS SCL21 SCARECROW-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003540 [exp] 915 / 0 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10040734 [exp] 370 / 3e-120 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10016496 [exp] 367 / 3e-119 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10041540 [exp] 244 / 3e-72 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 243 / 2e-71 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10006322 [exp] 218 / 3e-64 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10029592 [exp] 219 / 3e-63 AT1G63100 669 / 0.0 GRAS family transcription factor (.1) Lus10010462 [exp] 213 / 5e-63 AT5G41920 327 / 2e-108 GRAS family transcription factor (.1) Lus10017626 [exp] 202 / 2e-57 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G226800 [exp] 690 / 0 AT3G54220 424 / 3e-142 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.002G036100 [exp] 677 / 0 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.016G143833 [exp] 393 / 7e-128 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G114200 [exp] 390 / 3e-126 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G021400 [exp] 332 / 1e-108 AT5G41920 509 / 2e-180 GRAS family transcription factor (.1) Potri.016G018900 [exp] 332 / 1e-108 AT5G41920 506 / 5e-179 GRAS family transcription factor (.1) Potri.001G326000 [exp] 238 / 2e-70 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.003G122400 [exp] 223 / 9e-65 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.008G131700 [exp] 219 / 1e-63 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G109400 [exp] 219 / 2e-63 AT1G63100 711 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10033912 pacid=23172731 polypeptide=Lus10033912 locus=Lus10033912.g ID=Lus10033912.BGIv1.0 annot-version=v1.0 ATGATTAAGGGAGGTGGTTATGAAGTTGTGCACGACATGATGCAACAACAACAACAACCTCACGAGCCATGGGACTACTCCTCCGTTACCTTCCCATCCT CCGCCGTCAAGCCCGCCACAATCGATTACAACAACAACCTCCGTGGAGCCGCCGCCGTCGTCAACTTAGAGAGAAACGAGCTCTCCGAATGGGTTGAACA CGTCACCAAACAACTCATCGATGACTTGCCCCTCACGCCATCCGATCATCATCATCATCAAGCTCCTGGCTTCCACCACCCGCCTCCTCCTTACGTGGAT GATGACCATTTCCGACCGAGGAAAGTCATGCGAAGGATTCATGACCCAAGCGATCATGATCATCACCAGGCCGACAACAGTATTTCCTCCGACAGCTATA ACAACAACGACCAAGATCGTCTTAACTACCACCACATAAACAACAACCCTAGTAGTAGTATTGGAGTCTCCGAAGCCAACACATCATCCCCCGTCGCCCT CCCGATGAGCAAGGGTGATGAAGACAGCTTGGAGTTGATCTCCAAGCTCTTTGAGATCGCTGTAGCGATCTCTGTTGAAAACCTAGGAGAGGCTCATGAG ATGCTCCTCGAGCTGACCCATGTGGCCTCCCCTTACAGTTTGTCTTGTGCAGAACGGGTGGTGGCCTACTTCGCTAGGGCAATGTCTAGTCGCGTGATGA ACTCGTGGCTGGGGATATGTTCCCCGTTGACCAACCACCGGACCATCCATGCTGCCTTTCAGGTATTCAACAATGTCTCCCCTTTCGTAAAGTTTGCACA CTTTACCTCGAACCAAGCCATCTTGGAAGCCTTTCAACGACGTGACAGGGTCCACATCATCGATCTGGATATCATGCAGGGCCTCCAGTGGCCCGCGCTC TTTCACATCCTCGCCACCCGCGCCGAGGGCCCACCTCACGTACGGATGACAGGGATGGGGTCCTCCATGGACCTCCTTGTCGAGACAGGGAAACAACTCT CGAATTTCGCCAGAAGGCTAGGGCTATCCTTCGAGTTCCACCCAATCGCCAAGAAGTTTGGAGAAGTCGACATATCCATGGTGCCCTTAAGGAGAGGAGA GACCCTCGCAGTGCATTGGATGCAACACTCGTTATACGACGCAGTAGGGACAGACTGGAAGGCCATGAGGCTGCTCGAAGAGCTGGCGCCTACGGTCGTG ACACTAGTCGAGCAAGACGTATCCAACGGGGCAGGTTCATTTCTAGACCGGTTCGTGGGGTCTCTACATTACTACTCAACCATATTCGACTCCCTGGGGG CGTTTCTAGCCGCAGACGATCCCGGGAGGAACAAGGTGGAGCATTGTCTGTTCTATAGGGAGATCAACAACGTGATGGCAATAGGTGGGCCCGGGAGGAG CGGGGAGGAGAAGTTCAAACACTGGAGGAGCGAGCTCAACAGGAGCTCGTTCCTCCAGGTACCCATGAGTGGGAACTCCATGGCTCAAGCTCAGCTTATA CTCAACATGTTCCCCGCGGTTAACGGTTATAGCCTTGTTCAAGGGGATGGTACGTTGAGACTTGGGTGGAAAGATACTAGCTTGTTTACTGCGTCGGCTT GGACGTCGCCGGCGGCTGCTTCAAGATAA
AA sequence Show only first row Show all	>Lus10033912 pacid=23172731 polypeptide=Lus10033912 locus=Lus10033912.g ID=Lus10033912.BGIv1.0 annot-version=v1.0 MIKGGGYEVVHDMMQQQQQPHEPWDYSSVTFPSSAVKPATIDYNNNLRGAAAVVNLERNELSEWVEHVTKQLIDDLPLTPSDHHHHQAPGFHHPPPPYVD DDHFRPRKVMRRIHDPSDHDHHQADNSISSDSYNNNDQDRLNYHHINNNPSSSIGVSEANTSSPVALPMSKGDEDSLELISKLFEIAVAISVENLGEAHE MLLELTHVASPYSLSCAERVVAYFARAMSSRVMNSWLGICSPLTNHRTIHAAFQVFNNVSPFVKFAHFTSNQAILEAFQRRDRVHIIDLDIMQGLQWPAL FHILATRAEGPPHVRMTGMGSSMDLLVETGKQLSNFARRLGLSFEFHPIAKKFGEVDISMVPLRRGETLAVHWMQHSLYDAVGTDWKAMRLLEELAPTVV TLVEQDVSNGAGSFLDRFVGSLHYYSTIFDSLGAFLAADDPGRNKVEHCLFYREINNVMAIGGPGRSGEEKFKHWRSELNRSSFLQVPMSGNSMAQAQLI LNMFPAVNGYSLVQGDGTLRLGWKDTSLFTASAWTSPAAASR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10033912 [exp]	0	1
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10036966 [exp]	8.0	0.6743
AT4G25350		SHB1	SHORT HYPOCOTYL UNDER BLUE1, E...		Lus10037146 [exp]	9.6	0.6728
AT4G22990			Major Facilitator Superfamily ...		Lus10009314 [exp]	10.2	0.6770
AT2G39530			Uncharacterised protein family...		Lus10031305 [exp]	11.5	0.6707
					Lus10000914 [exp]	12.8	0.6707
AT5G59700			Protein kinase superfamily pro...		Lus10023324 [exp]	27.0	0.5839
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10003094 [exp]	44.0	0.4691
AT2G38890			unknown protein		Lus10023488 [exp]	45.7	0.5740
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10035611 [exp]	50.1	0.5738
					Lus10020633 [exp]	80.5	0.4857

Compare expression of checked genes

Lus10033912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.