Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23750 141 / 5e-39 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT4G27950 129 / 1e-34 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT5G53290 112 / 4e-28 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT4G11140 104 / 8e-26 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT3G61630 96 / 3e-22 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT2G46310 85 / 1e-18 AP2_ERF CRF5 cytokinin response factor 5 (.1) AT2G33710 83 / 2e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G13330 82 / 3e-18 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G61890 82 / 4e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G47520 81 / 6e-18 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032353 [exp] 405 / 3e-142 AT4G23750 207 / 2e-64 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10017550 [exp] 195 / 2e-60 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10027573 [exp] 138 / 2e-37 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10039324 [exp] 106 / 1e-25 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10014054 [exp] 86 / 3e-19 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10016827 [exp] 84 / 4e-18 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10003601 [exp] 83 / 5e-18 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10008214 [exp] 83 / 7e-18 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037487 [exp] 81 / 1e-17 AT3G16770 156 / 2e-47 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G136300 [exp] 165 / 3e-48 AT4G11140 160 / 1e-46 cytokinin response factor 1 (.1) Potri.001G094800 [exp] 152 / 3e-43 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.012G032900 [exp] 139 / 3e-38 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.015G023200 [exp] 136 / 4e-37 AT4G27950 211 / 9e-66 cytokinin response factor 4 (.1) Potri.002G167400 [exp] 118 / 1e-30 AT4G27950 162 / 3e-47 cytokinin response factor 4 (.1) Potri.014G094500 [exp] 108 / 3e-27 AT2G46310 163 / 3e-48 cytokinin response factor 5 (.1) Potri.019G131300 [exp] 101 / 2e-24 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.013G158500 [exp] 100 / 4e-24 AT4G27950 124 / 1e-32 cytokinin response factor 4 (.1) Potri.009G101900 [exp] 86 / 4e-19 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.010G006800 [exp] 84 / 9e-19 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10033938 pacid=23154681 polypeptide=Lus10033938 locus=Lus10033938.g ID=Lus10033938.BGIv1.0 annot-version=v1.0 ATGGATACAGTTAAGTTCACCAAGCTCCTCCGCCGCTCTTCATTTTCCGATGACTCAAAGCCGCCGACCACTCAGGTGGTCAGGATATCTGTTACCGACC CGGACGCTACTGATTCGTCAAGCGACGAAGAAGGGAATGGGTTTTTACAGCAGCGGGTGAAGAGATTCGTCAGTGAAATTACTGTGGAGTCTTCTTCTTC TTCTTCCTTACATTCTTGCTCTGTTTCCGGTGGAGGTGAAGAATACGGCGCCGCTTTAGGGGCTAATAATAACCGGAGGATGAGGAAGAGGAAATCAGGG AGCTCGAAGGCTAATAATAAATCGTCGAATGATTTGTCGGTGAGTAAGTCAGCTCCGGCGGTGAGGAAATTCAGAGGCGTACGGCAGCGGCCGTGGGGGA AGTGGGCGGCGGAGATTAGAGACCCGCTCAGGCGCGTGAGGGTGTGGTTGGGTACGTACAATACGGCGGAGGAAGCCGCTGCGGTTTACGACAACGCGGC TCTCCAGCTGCGTGGACCAGACGCCCTCACCAATTTCTCCGCTCCGGTGGTGGCTGCGACTGCCCCCACTGCTACCGCCAGCTCGGACTACAACTCCGGC TCGGAGTCACGAAATGACAAGGTTGGTCTACGGTCTCCGGTCTCGACCCTCCGGTTTCCATCTCCATCGGAAGAGGCGGAGTCCGCAAGTTTGCCGGCGG CGGTGAAGGTGAAAGAGGAGGAGCACGACTGTTCAGAGATTTCGGAGTTCTCTTCTTCCTTGTTCTCCGATGTGGCGGCGTATGATTTCAAGAGCTCTAT GCGGGATATCTTCGACGAGACCAATTTGGCCTTCGACGAAGGGTTCCTGAACGCGGATTCCAGCGACGACGTGTTCATGGACGCCGCCGTCGAGCCGGCA GATTTCGGGTTCGGGCTATCCAGTTTCCGTACAGAGGACTGTTTCGAGGACATCGGCGATTTGTTCTGGTCGGACTCACTGCTCTCCGTCTGA
AA sequence Show only first row Show all	>Lus10033938 pacid=23154681 polypeptide=Lus10033938 locus=Lus10033938.g ID=Lus10033938.BGIv1.0 annot-version=v1.0 MDTVKFTKLLRRSSFSDDSKPPTTQVVRISVTDPDATDSSSDEEGNGFLQQRVKRFVSEITVESSSSSSLHSCSVSGGGEEYGAALGANNNRRMRKRKSG SSKANNKSSNDLSVSKSAPAVRKFRGVRQRPWGKWAAEIRDPLRRVRVWLGTYNTAEEAAAVYDNAALQLRGPDALTNFSAPVVAATAPTATASSDYNSG SESRNDKVGLRSPVSTLRFPSPSEEAESASLPAAVKVKEEEHDCSEISEFSSSLFSDVAAYDFKSSMRDIFDETNLAFDEGFLNADSSDDVFMDAAVEPA DFGFGLSSFRTEDCFEDIGDLFWSDSLLSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10033938 [exp]	0	1
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10032353 [exp]	1.0	0.9585
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10012940 [exp]	10.5	0.8226
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10004978 [exp]	10.7	0.8671
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	19.9	0.8465
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004615 [exp]	22.8	0.8098
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008726 [exp]	25.5	0.8269
AT1G77620			P-loop containing nucleoside t...		Lus10035108 [exp]	26.5	0.8327
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10021677 [exp]	27.2	0.8339
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10001566 [exp]	28.6	0.8243
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10005012 [exp]	28.9	0.8473

Compare expression of checked genes

Lus10033938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.