Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 338 / 6e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 326 / 2e-93 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 316 / 1e-90 transmembrane receptors;ATP binding (.1.2) AT5G17680 290 / 1e-81 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 263 / 3e-73 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G58120 261 / 8e-73 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 261 / 1e-72 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 261 / 4e-72 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 253 / 1e-70 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63880 253 / 3e-70 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004747 [exp] 1256 / 0 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 1132 / 0 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10040576 [exp] 1082 / 0 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007829 [exp] 1056 / 0 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000423 [exp] 1019 / 0 AT1G27180 338 / 5e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007821 [exp] 1009 / 0 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007831 [exp] 984 / 0 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007825 [exp] 952 / 0 AT5G36930 318 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007828 [exp] 932 / 0 AT5G36930 319 / 7e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002200 [exp] 398 / 8e-123 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 392 / 9e-121 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 390 / 2e-118 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 388 / 5e-118 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 389 / 7e-118 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 388 / 1e-117 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 391 / 3e-117 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 388 / 3e-117 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 370 / 3e-117 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 386 / 8e-117 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10033953 pacid=23154865 polypeptide=Lus10033953 locus=Lus10033953.g ID=Lus10033953.BGIv1.0 annot-version=v1.0 ATGAACTACATAGGACGAGCCGCAATGGTTGTCGCCATTATTGCTTTCTTTAAGCTGTTTTGGGGAAGGATGAGGAGAAGTTGTGATCATGATCACCCAA ATGATGATACTTCTCAACAATTAGATTCTACCTCTGATTCTGGAGATTCTGATTTGGTGCACCTTCCCATCGGAGAGTATGAGGTTTTTCTGAATTTTAG AGGTCCAGATACACGCAATGAGATTACCAAAATCCTCCACCGTTTCCTTGTTAACTTGAAAATCCGTACATTCATAGATGATGATGAACTCCGTAAGGGG GAAGGAATATGGCCAAGCCTTGTTAAAGCTGTTGGTCAGTCAAAAATATCTATTCCTATCTTTTCACCTTGCTATGCCGAGAGCAAGTGGTGTCTCAAAG AATTGATCGAAATTATTGAACACCGAAAGCGAGAAAAAGGACATATCATACTTCCCATTTTCTATAATGTGAATCCTCGGGATGTACGCCATCAAACTGG ACCTTATCAAACTGCTTTTCAACAACACAAAAGAAATAACTTTGATGAAAAGACTATAGAAAGTTGGAAAGCTGCTTTGACTGAGGTTGGATCTTTAAAA GGGTGGCACATCAAAACTAAAGAAGAGGAGGTTGATGTTGCGGATGATGTTTCTGGAGTTGTATGGTCGCATCTAAGTAAGAATAACAACGTATTAGAGA TTGATAAGTTGGTTGGAATTAATGACCAGATAAAACAAATAGAAGATATGCTAGATATGGGCTCTAAAGGTGTGAATCTAGTTGGCATTCATGGCATGGG TGGTATCGGAAAGACCACGCTTGCAAAAGCTGTCTATAACAAAATTTCTGTCTGCTTTGATCGTTATAGTTTTGTGGAAGATATACGAGAAACACAAAAA CAAGCAGATGGTGTTCTTGTCTTACAAAAGAAGTTACTTTCTAATATCTTGAGGATGGACTCAGTTGGATCAGTGGTTGAAGCAAAGAAAATCATACGAG AGAGGGTGACTCAGTTCAAGATCCTTGTGGTTCTCGATGATATAGACGAAAAGTTCAATTTTCAGGATGTCTTGGGAAGTTTGAAGAATTTTAATCCAGA AAGTCGTTTTATCATAACGTCGAGAGATCTAAAGGTCATAAGGAGGTTAAGCGAAGATCAAAGCAAATTGTACGAAGTTTCAGTAATGAGTCCTAGTCGC TCGCTTCAATTATTTTGCAAGCATGCATTTAGAAAGGATTTTCCACCGTCAGGTTTTGAGGCCTTATCAGAAAATATCGTATCCACCACAGGAGGACTTC CATTGACACTTACGGTTATAGGGTCATTTCTTTTCCGAGAAGAAGAAGTTGTCTGGAAAGCCAAATTGGAGCAGTTACGGCAAATGCCAGAGAAAGGTGT AATTGATAGGTTAATAATTAGCTACGACTCTTTAAACTACGAAGCGCAACAAATATTCCTAGATATTTCTTGCTTCCACATCGGAGAGGATAAAGAAATG GCTTCTTACATGTGGAGCGATTGCAAATTTAGTCCCGTCATTAACGTCAATGTTCTTGTTCAAAGATCTCTGCTCAAAATTGGGGATCATAATGAGTTCC TGATGCACGATCAATTAAGAGATATGGGTAGAGAAATTATCCGCAAAGAAAATATTGAACATCCAGAAATGAGAAGCAGAATATGGTTAGAGGAGGAAGC TAACAATGTTTTAGTTAACAACAAGGGAACAAATCAAGTAAGAGCCATGAGAGCATACTCAAAAAGTCATGCTTTAGGTTTCAGAAATGGATGTTTTACG AATATGACAGAATTGAGATATTTTGAGGGGAAAGACACGGAGCTAATCGGAGATTTCAGTCATGTTCTTCCTAATTTAAAGTGGATTCATTTTGGAGTTG CTGATATCTCGAAATATAGTTATCCAATGCGCTCTAGGGCGAGCTTCAATATGAAGAACTTGATCATATTTTATGTTACCGGTTTTGCGTATGACTACAT CACAGCAAAGGAGGCAAATAAGTTGAAAGTTCTAATTCTTGGTCCCTGTGACATGATGAGAAAACTTCCAGAATTTCCAGAATCTAGAAGCCTAGAGATA CTGTCGATTTTGTGGTTCGAGAATCGCAAGGAAGACCTCGAAATTGGGACGTTGTGTAACCTTAAAGTGTTACGATTAGGTTCTTGTAAGCTTGGAACGA TCAAAGGTGGCACCATTGGGACGATGATGAAGGGGCTCCGGGAGCTCTATCTCCACAACACTAATTGTGATCATGACAGTTTCAGAAGAGCGATTGCCGA TATAGAGGAATTGACCTCGCTCAAAATCTTGAATGTTGAGAGTCGTCATTTAGTGGATGTTTTGGAAGGGATTAAGCTACCCAAAAGTTTAAGGCTTCTG TACACTTCTTCTGGTTTTGCTAATCTTGAAGAGCTGTTGGATTTAGAAGAATTGTCTATCGAAGGAAGTAAGGAGACCACAGAACTTATGATTATGCCAT GGTTGGTTACTTCGGCCAAGTTGAGATCCATCAAGCTTCACTACATGAGGAGGATAGTTATGGTCGGAAGTCCGAGCACCACCATGCTACCATCATCCCT CACTAAGCTAGAACTCCACACTGTACATTCGGACCGAATTCCGACTCTAGAGAATCTAAGCAACTTGACAGAATTGGGAATTCGTCGCTGTCCTAATCTT CAAGAGGTCCAAGGTCTCGGAGGGCTGAAATCATTGCAGATTCTCACTATATACGTTGCTCCGAAATTGACTCGTATTGATGGCCTTGAGAATCTCTTGT CTAATTCTACGTCCAAGTGCAGGTTGAAAGAGTTGTGCATATATGAATGTCCTCTTCTTCGTGGAGTACTAACATTCGAAAGAGAGATAGATCAAATTGA ATCTTTACTCAAACTGGAATTCCAGTACAGTCCATCCATTGATGGTGGATCAATTCTCAGGCTGTCCAAGTTCCCAATGCTCAAGGAATTAAAGATAATG GGTAGGCTTGACAACATTTTGGTTTAA
AA sequence Show only first row Show all	>Lus10033953 pacid=23154865 polypeptide=Lus10033953 locus=Lus10033953.g ID=Lus10033953.BGIv1.0 annot-version=v1.0 MNYIGRAAMVVAIIAFFKLFWGRMRRSCDHDHPNDDTSQQLDSTSDSGDSDLVHLPIGEYEVFLNFRGPDTRNEITKILHRFLVNLKIRTFIDDDELRKG EGIWPSLVKAVGQSKISIPIFSPCYAESKWCLKELIEIIEHRKREKGHIILPIFYNVNPRDVRHQTGPYQTAFQQHKRNNFDEKTIESWKAALTEVGSLK GWHIKTKEEEVDVADDVSGVVWSHLSKNNNVLEIDKLVGINDQIKQIEDMLDMGSKGVNLVGIHGMGGIGKTTLAKAVYNKISVCFDRYSFVEDIRETQK QADGVLVLQKKLLSNILRMDSVGSVVEAKKIIRERVTQFKILVVLDDIDEKFNFQDVLGSLKNFNPESRFIITSRDLKVIRRLSEDQSKLYEVSVMSPSR SLQLFCKHAFRKDFPPSGFEALSENIVSTTGGLPLTLTVIGSFLFREEEVVWKAKLEQLRQMPEKGVIDRLIISYDSLNYEAQQIFLDISCFHIGEDKEM ASYMWSDCKFSPVINVNVLVQRSLLKIGDHNEFLMHDQLRDMGREIIRKENIEHPEMRSRIWLEEEANNVLVNNKGTNQVRAMRAYSKSHALGFRNGCFT NMTELRYFEGKDTELIGDFSHVLPNLKWIHFGVADISKYSYPMRSRASFNMKNLIIFYVTGFAYDYITAKEANKLKVLILGPCDMMRKLPEFPESRSLEI LSILWFENRKEDLEIGTLCNLKVLRLGSCKLGTIKGGTIGTMMKGLRELYLHNTNCDHDSFRRAIADIEELTSLKILNVESRHLVDVLEGIKLPKSLRLL YTSSGFANLEELLDLEELSIEGSKETTELMIMPWLVTSAKLRSIKLHYMRRIVMVGSPSTTMLPSSLTKLELHTVHSDRIPTLENLSNLTELGIRRCPNL QEVQGLGGLKSLQILTIYVAPKLTRIDGLENLLSNSTSKCRLKELCIYECPLLRGVLTFEREIDQIESLLKLEFQYSPSIDGGSILRLSKFPMLKELKIM GRLDNILV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	0	1
AT1G67790			unknown protein		Lus10034566 [exp]	1.4	0.9681
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	2.0	0.9676
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	3.0	0.9662
AT2G18196			Heavy metal transport/detoxifi...		Lus10033250 [exp]	3.2	0.9364
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022305 [exp]	3.5	0.9636
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000548 [exp]	3.5	0.9547
AT5G36930			Disease resistance protein (TI...		Lus10007811 [exp]	3.9	0.9580
AT5G36930			Disease resistance protein (TI...		Lus10007813 [exp]	4.7	0.9271
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10041979 [exp]	5.9	0.9427
AT5G36930			Disease resistance protein (TI...		Lus10027184 [exp]	6.0	0.9412

Compare expression of checked genes

Lus10033953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.