Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21430 901 / 0 MYB ATALY3 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) AT3G05380 481 / 2e-151 MYB ALY2, ATALY2 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) AT5G27610 296 / 1e-84 MYB ATALY1 ARABIDOPSIS THALIANA ALWAYS EARLY 1, ALWAYS EARLY 1, DIRP ;Myb-like DNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002879 [exp] 2026 / 0 AT3G21430 764 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) Lus10004489 [exp] 272 / 7e-76 AT3G05380 558 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) Lus10029910 [exp] 262 / 8e-73 AT3G05380 549 / 1e-179 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G216600 [exp] 1305 / 0 AT3G21430 1006 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) Potri.010G023201 [exp] 1298 / 0 AT3G21430 939 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) Potri.013G020500 [exp] 678 / 0 AT3G05380 807 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) Potri.005G029000 [exp] 560 / 0 AT3G05380 813 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06584 [flax] [poplar] DIRP DIRP CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033961 pacid=23154760 polypeptide=Lus10033961 locus=Lus10033961.g ID=Lus10033961.BGIv1.0 annot-version=v1.0 ATGGCTCCATCAAGAAAATCTAGAAGTGTGAATAAAAGGTTTTCCGGCATTGATGAGGTTGACACTAATGATGATGCAGAATATGCCAACAAAAGTAGGC AGAAGAAACGCAAATGGACTGGCAAATTAGGTCCAAAATGGACAAAAGAAGAGCTTGAATGTTTCTACAAAGCATATCGCAAGCATGGTAAAGACTGGGA GAAGGTAGCTGCTGTTGTCCGTAGCCGGTCGGTAGGGATGGTGGAGGCCCTTTATTCCATGAACACGGCATACTTATCTCTTCCTAAAGGCTATGCTTCG GCGGCTGGACTGATAGCAATGATGACAGATCACTACTCTAATCAGGTGGATAGTGACAGTGAACAAGAAGTAAATGAGGGTCCCAGCACTTCCCACAAAC CCCAGAAACGTGCACGGACGGCCAAAGGTTCAGCCGTGTCACCAGTTACAGATCTTTCAAAATCCATATCGGCTGCATCAAATTATGGCTGTTTGTCTTT GTTGAAGAGGAGGCGCTCAGAAAGCAGACCTTGGGCTGTAGGAAAACGGACTCCTCGAGTCCCGGTATCTTACTCTTATGACAAAGACAATGAAGAGAGA TATATTTCACCAATACGGCAGGGTCTAAAGTTGAAGGGCGGGGCATTTGATGATGATAACAATGATGATGGCGATGATGATGTTGCCCATAGGCTTGCAT TAGCACTGACAGTGGCTTCACAAAGAGGGCCCACTCCACAAGTTTCTCAAACATTGACTAGGAAAAAAGGTTCATCCTCATCGGCCCAAAATGGTGAACA AATGCGTGCTGATTCAGAGATGACGAGTGCAAAGCTGCGCTGTAGTGAAATGGATGACAGCGGTTGTGAACTGAGTCTAGGAAGTACAGAAGCAGACACT GGAGATTATACAAGGGATAAAAGGTTCTTGAAAGGAAAGAGGTACCAGAGATGGAGATCAGAACCAGAAGATAGCATGGACAATCATTTGGATGAGATAA AGGAAGCCTGTAGCGGAACTGAGGAAGGACAGAAGCCCGCTGGTAAAGGAAGATTCGATATGGAAGTTACTAATGCAAAACTGCAGAGATCCTCCTATGA TAAGGTTCCAAAGAAGAGAAGCAAGAAGGTCCTTTTTGGAGAAGGTGAAGATATTGCCTTGGATGCATTGCAAACTCTAGCTGATTTGTCCTTGAGACTG CCAGAGGATGGTACTGAGTCATCTGTGCATGTTCAGGAAGGGAAAACTGTAAATGTAGCTAAGTCTAAGCTGAAAGGGAATTCTCCAGCTTCTAGAATTA AAGTCACTCCGTCCAAGTCAAATAAACAAGCAAAATCTACACAAAATGTCATTGCTTTACCTGAATTAGAGGGAAGCAATCAGGTTAATGTTGGGCCTCG GAAAAGGAGGAACAAGCCCCCACAATCAAAAACGTCAGAAAAGGAACAACACAGTGGTCCTAACTTGGGTGAATCACAGAAAGTTAAGGTTGTTGATGAT GTAAATACCTCTATCGATGATGCCAAACCCTCTCACGATGCTACATCTGGAAAGCAAAAGAGATCAACAAAAGTTCCAGAGCGTACTTCCTCAAATGCTG ATCCTGGAAGAGAGTCAAATGATTCAGGTCCATCAGCAGCTCAAGCAGTATCTTCAAACCAGGTCATTCTTCCTACTAAAGTGCGGAGTCGCCGCAAAAT AAGCACACCAAAACCACTTCTTGAGAAAGATACAAAGACTTGCGAGAACATTACACATGGTCAATCCAAAATTTCAATACCTTCATTCCCGGACCGACCT CTTCCTGTTAAGGAAAAGCTTAGCAATTGCCTCTCGCGTCGTGGACTAAGGCAATGGTGTGTCTTTGAGTGCTTCTATAGTGCAATTGATTACCCATGGT TTGCTAAAAGGGAGTTTGTGGAGTACCTAGATCATGTTGGTTTGGGTCATATTCCTAGATTAACTCGCGTGGAGTGGGGTGTCATAAGGGGTTCTCTTGG TAAGCCTCGGAGATTTTCCAGACAATTTTTGAAGGAAGAGAAAAAGAAGCTTTATCAATATCGGGAGTCCGTTAGGGAACATTATACTGAACTTCGTGCT GGTACTAGGGAAGGACTTCCAACGGATCTGGCTCGACCTTTATCGGTTGGGCAACGCATTATTGCACTTCATCCCCGGACAAGAGAAATCCACGATGGGA GTGTGCTAACTGTTGATCATAATAGGTGCTGTGTTCGATTTGACCAACCTGAGCTCGGGTTCGAATTTGTCATGGACATTGATTGCATGCCATTAAATCC AGAGGAAAATTTGCCTGCATCTCTTACCAGACATGGTCTTGGTATCAAGAAGTATATGGAGAACTTGAACGAGTGCAAAACAAGTGCGTCACAGGCTGAA AACGCGATGGAAGGGTACATAAAGTTTCACCAAGAGAACCTGGATGCCACCAATGGTTTCTCCCATATTCCTCCCCCAAATTTTCATGCCCTGCGGCAAT CACAGGGTCTCTCCCTAGGTCTAGCTACGCCAGTTACTGCAGGATTTGGTGAAACCATCAATACCCAAGCAGCAAACACTCAGCCTTCCGTTCATACACA TATCCAAGCGAAGGAAGCTGATATTCAAGCATTATCTGAACTAACTCGAGCTCTTGAAAAGAAGGACGCTGTGGTATCTGAATTGAAGCGACTGAATGAG GACGTGTTGGAAAGTCAAAACAATGGAGAAAAAAATAATCTGAGAGATTCAGAATCTTTCAAGAAGCACTACGCTGCGCTTTCATCTGCGCTTTCTAGCT TGCGACAACGAAACACATACCAAGTAATCACTCCAGCTATACCCATGATGACTACAGGCGACCCTATTTTGTACTACAGCTCGTTCAATCCTCACCCTAC CGAAGAAGTCCAAGATTCCGGGTCTCATGTTGCTGAAATTGTCGAATCTTCCAGATCAAAGGCCCAAATAATGGTCGATGCAGCAATGCAGGCTGTGACA TCTCTAAATAAGGAAGGAAGCAACATTGAGAGTATCGAGGAAGCCATAGATTTCGTGAATAACCAGCTTTCCGTTGATAATTTAACCACGCAATCCTCCA GACCGTCTCATCCTGAGAATTCTACTCAGGGTGCTCTTGGAGGATCCCAAGATCAGTCAAGTTCTGGCACAGCAAACACCGAGGGCAATCACACATCAGA TACCAAGTCGTCGAAAAACTTATCCGACTTGAACGAAGTGCAAATTCCTTCAGATCTAATATCGCAGTCTGTAGCCACCTTGCTCATGATTCAGAAATGT ACAGAGCGACAGTTTCCCCCGAGCGACATTGCTCAAGTGTTGGACTCAGCGGTGGCGAATTTGAAGCCATCGTGCTCGCAGAATCTCCCGGTTTATGCTG ACATACAGAAATGCATGGGGATCATACGGAGCCAAATATTGGCGCTCATTCCCACGTAA
AA sequence Show only first row Show all	>Lus10033961 pacid=23154760 polypeptide=Lus10033961 locus=Lus10033961.g ID=Lus10033961.BGIv1.0 annot-version=v1.0 MAPSRKSRSVNKRFSGIDEVDTNDDAEYANKSRQKKRKWTGKLGPKWTKEELECFYKAYRKHGKDWEKVAAVVRSRSVGMVEALYSMNTAYLSLPKGYAS AAGLIAMMTDHYSNQVDSDSEQEVNEGPSTSHKPQKRARTAKGSAVSPVTDLSKSISAASNYGCLSLLKRRRSESRPWAVGKRTPRVPVSYSYDKDNEER YISPIRQGLKLKGGAFDDDNNDDGDDDVAHRLALALTVASQRGPTPQVSQTLTRKKGSSSSAQNGEQMRADSEMTSAKLRCSEMDDSGCELSLGSTEADT GDYTRDKRFLKGKRYQRWRSEPEDSMDNHLDEIKEACSGTEEGQKPAGKGRFDMEVTNAKLQRSSYDKVPKKRSKKVLFGEGEDIALDALQTLADLSLRL PEDGTESSVHVQEGKTVNVAKSKLKGNSPASRIKVTPSKSNKQAKSTQNVIALPELEGSNQVNVGPRKRRNKPPQSKTSEKEQHSGPNLGESQKVKVVDD VNTSIDDAKPSHDATSGKQKRSTKVPERTSSNADPGRESNDSGPSAAQAVSSNQVILPTKVRSRRKISTPKPLLEKDTKTCENITHGQSKISIPSFPDRP LPVKEKLSNCLSRRGLRQWCVFECFYSAIDYPWFAKREFVEYLDHVGLGHIPRLTRVEWGVIRGSLGKPRRFSRQFLKEEKKKLYQYRESVREHYTELRA GTREGLPTDLARPLSVGQRIIALHPRTREIHDGSVLTVDHNRCCVRFDQPELGFEFVMDIDCMPLNPEENLPASLTRHGLGIKKYMENLNECKTSASQAE NAMEGYIKFHQENLDATNGFSHIPPPNFHALRQSQGLSLGLATPVTAGFGETINTQAANTQPSVHTHIQAKEADIQALSELTRALEKKDAVVSELKRLNE DVLESQNNGEKNNLRDSESFKKHYAALSSALSSLRQRNTYQVITPAIPMMTTGDPILYYSSFNPHPTEEVQDSGSHVAEIVESSRSKAQIMVDAAMQAVT SLNKEGSNIESIEEAIDFVNNQLSVDNLTTQSSRPSHPENSTQGALGGSQDQSSSGTANTEGNHTSDTKSSKNLSDLNEVQIPSDLISQSVATLLMIQKC TERQFPPSDIAQVLDSAVANLKPSCSQNLPVYADIQKCMGIIRSQILALIPT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10033961 [exp]	0	1
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10002879 [exp]	1.0	0.9467
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10018496 [exp]	5.5	0.9386
AT3G17900			unknown protein		Lus10037215 [exp]	6.2	0.9061
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10039707 [exp]	9.3	0.9345
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Lus10009783 [exp]	9.5	0.9067
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10009816 [exp]	11.1	0.9229
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10005782 [exp]	11.3	0.8948
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10004730 [exp]	12.7	0.9194
AT1G31810		AFH14	Formin Homology 14 (.1)		Lus10003956 [exp]	16.6	0.8696
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	16.9	0.9190

Compare expression of checked genes

Lus10033961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.