Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18560 159 / 1e-45 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1) AT5G13910 122 / 2e-33 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT1G28160 108 / 1e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G12890 107 / 2e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G24590 102 / 6e-25 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) AT1G12980 99 / 1e-23 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT3G61630 92 / 3e-21 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT5G13330 90 / 5e-21 AP2_ERF RAP2.6L related to AP2 6l (.1) AT3G15210 89 / 1e-20 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT5G44210 88 / 1e-20 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035129 [exp] 125 / 6e-34 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Lus10017907 [exp] 101 / 1e-24 AT1G24590 134 / 1e-37 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10035076 [exp] 100 / 4e-24 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10033664 [exp] 91 / 9e-22 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10026053 [exp] 91 / 4e-21 AT5G18560 97 / 7e-24 Integrase-type DNA-binding superfamily protein (.1) Lus10014345 [exp] 89 / 1e-20 AT1G12980 97 / 1e-24 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) Lus10039857 [exp] 87 / 5e-20 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10016212 [exp] 87 / 1e-19 AT2G44840 146 / 1e-43 ethylene-responsive element binding factor 13 (.1) Lus10031526 [exp] 87 / 1e-19 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G215600 [exp] 177 / 7e-53 AT5G18560 176 / 4e-52 Integrase-type DNA-binding superfamily protein (.1) Potri.003G077700 [exp] 121 / 2e-32 AT5G13910 118 / 3e-32 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.001G157100 [exp] 120 / 5e-32 AT5G13910 101 / 6e-26 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.003G161000 [exp] 118 / 5e-31 AT1G28160 128 / 1e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.001G069300 [exp] 118 / 8e-31 AT1G28160 121 / 7e-33 Integrase-type DNA-binding superfamily protein (.1) Potri.008G186300 [exp] 107 / 6e-26 AT1G24590 69 / 1e-12 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Potri.019G088000 [exp] 100 / 2e-25 AT1G12890 104 / 1e-28 Integrase-type DNA-binding superfamily protein (.1) Potri.010G046600 [exp] 102 / 3e-24 AT1G24590 71 / 2e-13 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Potri.005G219600 [exp] 96 / 1e-23 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1) Potri.002G043300 [exp] 94 / 5e-23 AT5G44210 88 / 8e-22 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10033963 pacid=23154874 polypeptide=Lus10033963 locus=Lus10033963.g ID=Lus10033963.BGIv1.0 annot-version=v1.0 ATGTCTACCTCCTCCGACAAACCCTTCAACCTCCTCCACACGACCTCCCCGACATCCACCGCCACCACCGGAACCTTCACCATCCTCCAACGAAACACCT CACCTTCCTCCTCTTCCCCGCCAACCACCGAGCGCCGCGGCCGCCGCAAGCAGGCTGAACCTGGCCGCTTCCTCGGCGTTAGGCGCCGACCGTGGGGCCG CTACGCCGCAGAGATACGCGACCCCACCACCAAAGAGCGCCACTGGCTCGGCACCTTCGACACTGCCCAGGAAGCTGCATTGGCCTACGACCGAGCCGCC CTCTCAATGAAAGGCACCCAAGCCAGAACCAACTTCATCTATACCACCACTTCTACCCCTCCCAACAACATTGCCACAAATATTAACTATAATAACAACA ATGCCACTAACTTCCATTATTCCCTCCCCTCTCCCTACGATCCCCACCAAATTACGTTCCTGCCACCGTCCCATGACGACCATAATATTAACCATACGCC CTTTCTCATCAACTACGACAGCCAAACTTATAATAATAATAATATTAATAATCATGCTGTTGGACCGGAGCGTAGTTCGATCTCGTTCCCTCACGTGGAC GATTACCAGGAGGAGTCCAATTCTGGCTACTTAGGCTGCATCGTACCAGATAACTGCCTTCGTCCGCCATCATCATCCTCCTCCTCCCCCGGTTCGTCCG GGAATCCTAAAACGGCGTCGCCCTTCGAGAATGTGAATAATTCGATCTGGGGAGGCGGGGTTGAGAAGGACTCTTCGTCGCCGCCGTTGTCCTCGTGGGA GAGGTACGATTCCGGAGACTTGTCGGCGGTGATCAATAGCTGCCGGACGATGCGGGTGGATGACGTGTGCATGGAGAGCGGCGGCGAAGGGAGCTACGGG GAGTTGATGGCGGCGGGTCAGTCATACTCGGCAGCGAGTTACAATATGGGTCCGGTGGATTTCGGGTACTCGATGTTTTGA
AA sequence Show only first row Show all	>Lus10033963 pacid=23154874 polypeptide=Lus10033963 locus=Lus10033963.g ID=Lus10033963.BGIv1.0 annot-version=v1.0 MSTSSDKPFNLLHTTSPTSTATTGTFTILQRNTSPSSSSPPTTERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAA LSMKGTQARTNFIYTTTSTPPNNIATNINYNNNNATNFHYSLPSPYDPHQITFLPPSHDDHNINHTPFLINYDSQTYNNNNINNHAVGPERSSISFPHVD DYQEESNSGYLGCIVPDNCLRPPSSSSSSPGSSGNPKTASPFENVNNSIWGGGVEKDSSSPPLSSWERYDSGDLSAVINSCRTMRVDDVCMESGGEGSYG ELMAAGQSYSAASYNMGPVDFGYSMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18560	AP2_ERF	PUCHI	Integrase-type DNA-binding sup...		Lus10033963 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10000346 [exp]	14.4	0.7855
AT5G05340			Peroxidase superfamily protein...		Lus10006534 [exp]	17.5	0.7616
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012478 [exp]	23.6	0.7703
AT2G25735			unknown protein		Lus10007679 [exp]	32.4	0.7741
AT5G66390			Peroxidase superfamily protein...		Lus10041784 [exp]	33.8	0.7618
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10042277 [exp]	39.2	0.7147
					Lus10008694 [exp]	52.2	0.7499
AT3G55090		ABCG16	ATP-binding cassette G16, ABC-...		Lus10001971 [exp]	75.8	0.7433
AT2G03240			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026622 [exp]	120.5	0.7205

Compare expression of checked genes

Lus10033963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.