Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06060 175 / 3e-55 TSC10A TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19200 167 / 7e-52 TSC10B TSC10B, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010509 [exp] 238 / 9e-82 AT3G06060 278 / 3e-94 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024146 [exp] 199 / 2e-64 AT3G06060 450 / 6e-160 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039501 [exp] 190 / 2e-62 AT3G06060 260 / 2e-87 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010511 [exp] 72 / 2e-17 AT3G06060 105 / 4e-29 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191800 [exp] 195 / 6e-63 AT3G06060 448 / 2e-159 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10034045 pacid=23154825 polypeptide=Lus10034045 locus=Lus10034045.g ID=Lus10034045.BGIv1.0 annot-version=v1.0 ATGAAGACCCGGTCCGACAGCCGTCCAGTTTCCATTGCTCTCATGTCGTCGCAGGCTGGCCAGGTTGGGGTTTATGGATACACTGCTTATGCAGCAAGCA AATTCGGGCTCCGGGGAATGGCGGAGGCACTTCAGCAGGAAGTAATTGCCGATGATATTCATGTCTCTCCTATTTTCCCTCCGGACACTGAAACTCCCGG TCTCATTGAAGAGAACAAGAAAAGGCCGGTGTTGACGAGTATTATAGCAGCACCATCTGGTGCAATGAAAGCTGAGGATGTTGCTAGGAAGTGTTTGGAT GGGATCAGGTCTGCAAGTTTCTTTGTGCCTTGCAACTTCGAGGGTGTGATACTATCCATCACAAAGGCTGGTTATCGCCTCAGAGATCATTCCTGA
AA sequence Show only first row Show all	>Lus10034045 pacid=23154825 polypeptide=Lus10034045 locus=Lus10034045.g ID=Lus10034045.BGIv1.0 annot-version=v1.0 MKTRSDSRPVSIALMSSQAGQVGVYGYTAYAASKFGLRGMAEALQQEVIADDIHVSPIFPPDTETPGLIEENKKRPVLTSIIAAPSGAMKAEDVARKCLD GIRSASFFVPCNFEGVILSITKAGYRLRDHS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10034045 [exp]	0	1
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	1.0	0.9375
AT1G11050			Protein kinase superfamily pro...		Lus10018860 [exp]	4.6	0.8585
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	6.0	0.9217
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10041794 [exp]	7.7	0.8933
AT1G16220			Protein phosphatase 2C family ...		Lus10027122 [exp]	8.1	0.8836
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	9.9	0.9101
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	11.3	0.9072
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	11.8	0.8541
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10005113 [exp]	12.3	0.8470
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10029409 [exp]	12.6	0.8940

Compare expression of checked genes

Lus10034045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.